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Molecular Analysis of pcc1, a Gene That Leads to A-Regulated Sexual Morphogenesis in Coprinus cinereus
Yukio Murataa, Motohiro Fujiia, Miriam E. Zolanb, and Takashi Kamadaaa Department of Biology, Faculty of Science, Okayama University, Okayama 700, Japan
b Department of Biology, Indiana University, Bloomington, Indiana 47405
Corresponding author: Takashi Kamada, Department of Biology, Faculty of Science, Okayama University, Okayama 700, Japan., kamada{at}cc.okayama-u.ac.jp (E-mail).
Communicating editor: R. H. DAVIS
| ABSTRACT |
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A homokaryotic strain (5337) in our culture stock of Coprinus cinereus produced fertile fruit bodies after prolonged culture. Microscopic examination revealed that hyphae dedifferentiated from the tissues of one of the fruit bodies, as well as all basidiospore derivatives from the fruit body, exhibited pseudoclamps, whereas vegetative hyphae of 5337, from which the fruit body developed, had no clamp connections. Genetic analysis showed that the formation of pseudoclamps results from a recessive mutation in a gene designated pcc1 (pseudoclamp connection formation), which is distinct from the A and B mating type genes. Cloning and sequencing of the pcc1 gene and cDNA identified an ORF of 1683 bp interrupted by one intron. Database searches revealed that pcc1 encodes an SRY-type HMG protein. The HMG box shared 44, 41, and 29% sequence identities (>80 amino acids) to those of FPR1 of Podospora anserina, MAT-Mc of Schizosaccharomyces pombe, and prf1 of Ustilago maydis, respectively. Northern analysis revealed that the level of pcc1 expression is higher in the dikaryon, in homokaryons in which the A and B mating type developmental sequences are individually activated, than in the homokaryon in which these sequences are not active. Sequencing of the pcc1-1 mutant allele revealed that the mutant carries a nonsense mutation at serine 211, a residue located between the HMG box and the C terminus. Based on these results, possible roles of the pcc1 gene in the sexual development of homobasidiomycetes are discussed.
THE homobasidiomycete Coprinus cinereus is a tetrapolar species in which mating type is determined by genes at two unlinked loci known as A and B (![]()
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In this paper, we describe the analysis of a mutation in a gene distinct from the A-mating type locus of C. cinereus that leads to constitutive operation of A-regulated sexual morphogenesis, i.e., pseudoclamp connection formation, in the absence of the A protein heterodimer.
| MATERIALS AND METHODS |
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Strains and culture conditions:
Strains of C. cinereus (Schaeff. ex Fr.) S. F. Gray sensu Korn. listed in Table 1 were used. CY-1 agar plates in 9-cm petri dishes (![]()
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Construction of plasmid DNA:
pXb7 was a 7-kb XbaI fragment from cosmid 6E4, which complemented the pcc1-1 (pseudoclamp connection formation) mutation, ligated into pGEM-7Zf(+) (Promega, Madison, WI). pKp5 was a 5.5-kb XbaI-KpnI fragment from pXb7, ligated into pBluescript II KS(+) (Stratagene, La Jolla, CA). pKp528 and pKp5402 were generated by introducing progressive deletions from one end of pKp5 using exonuclease III (Pharmacia Biotech, Piscataway, NJ), as described by ![]()
C. cinereus DNA-mediated transformation:
DNA-mediated transformation using a pcc1-1 mutant as a recipient was carried out according to the method described by ![]()
Construction of cosmid libraries:
Cosmid libraries of chromosome V from the wild-type strain (Okayama-7) and the pcc1-1 mutant strain (5337#1) were constructed as described by ![]()
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Hybridization:
DNA or RNA was blotted to Hybond-N+ (Amersham, Arlington Heights, IL). Gene Images random prime labeling and detection system (Amersham) was used for preparation of probes and detection of probes hybridized to nucleic acids.
DNA sequencing:
Sequencing was performed with a series of fragments derived from the gene in pBluescript II KS(+) (Stratagene) obtained by sequential deletions from one end by exonuclease III (Pharmacia Biotech). The nucleotide sequences of the fragments were determined with an automated DNA sequencer (model 373A; Perkin Elmer, Norwalk, CT) and a PRISM dye primer cycle sequencing kit (M13 forward or M13 reverse), as recommended by the manufacturer's instructions. The nucleotide sequences were analyzed with BLAST (![]()
Nucleic acid isolation:
Cosmid and plasmid DNA were prepared with the alkaline lysis method (![]()
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Analysis of pcc1 cDNA:
To sequence the cDNA of pcc1, PCR was carried out on the cDNA library of C. cinereus (![]()
Microscopy:
A piece of mycelium was inoculated on MY liquid medium on a glass slide, which was set in a moisture chamber at 28°. After incubation for 23 days, the liquid medium was withdrawn with filter paper, and a drop of 2 µg/ml of DAPI in 20 mM Tris-HCl (pH 7.5) was dropped on the hyphae. The samples were immediately observed under an epifluorescence microscope (Carl Zeiss, Inc., Thornwood, NY) equipped with phase-contrast optics.
Genetic techniques:
Crosses were made by laying two inocula (1 x 1 mm) 1 mm apart on malt extractyeast extractglucose agar plates. Basidiospore germlings were isolated at random using a chisel-shaped needle under a dissecting microscope (![]()
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| RESULTS |
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Isolation and genetic analysis of a pcc1-1 mutation:
A homokaryotic strain (5337) regularly developed fruit bodies after about a 1-mo cultivation on CY-1 agar plates. Hyphae dedifferentiated from tissues of the fruit body primordia and mature fruit bodies always had pseudoclamp connections (Figure 1B), whereas hyphae in vegetative mycelium from which fruit bodies had developed did not have any clamp connections. The fruit bodies produced basidiospores, although the number of basidiospores was reduced as compared with the wild-type dikaryon and their stipes were abnormally short (Figure 1A). Karyogamy and meiosis are likely to be normal in those basidia that produce spores because the spores are viable. We isolated 76 basidiospore derivatives from the fruit bodies at random. Microscopic examination showed that all the basidiospore derivatives isolated had pseudoclamp connections. The respective derivatives were transferred to slants of malt extractyeast extractglucose medium and were left in conditions that promote fruiting. All isolates were able to fruit without mating. These results suggested that during the growth of 5337, a gene(s) mutated to permit the formation of pseudoclamp connections and the development of fruit bodies.
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We mated a basidiospore derivative with pseudoclamp connections (designated 5337#1) to a wild-type homokaryon (5401). 5337#1 only donated nuclei. As a result, a dikaryon with true clamp connections emerged only from the margin of the 5401 colony. The dikaryon formed apparently normal fruit bodies with normal, long stipes and abundant basidiospores. We isolated 107 F1 progeny and examined them for the presence or absence of pseudoclamp connections and for mating types. Of 107 F1 progeny isolated, 52 exhibited pseudoclamp connections and 55 did not. Thus, pseudoclamp connection formation results from a mutation in a single gene (P = 0.700.80), which is designated pcc1 (pseudoclamp connection formation). The four mating types, A1B1, A8B7, A1B7, and A8B1, were found in the progeny, and pcc1 and its wild-type allele segregated independently from the mating-type loci A and B (P = 0.200.30 and 0.300.50, respectively), showing that pcc1 is at a locus that is unlinked to either of the mating-type loci. Similar results were obtained in a cross with another homokaryon, 5302 (data not shown). Only F1 progeny with the pcc1-1 mutation produced mature fruit bodies or fruit body primordia, showing that pcc1 is relevant to fruiting. However, it seems that a gene(s) other than pcc1 is also involved in fruit body morphogenesis because fruit body development was different among the F1 progeny, i.e., some progeny developed normal, mature fruit bodies, some progeny developed fruit bodies with abnormally short stipes, and some progeny produced fruit body primordia that did not mature. We did not attempt to identify this other gene(s) in this study.
To test whether the pcc1-1 mutation is dominant or recessive, we needed to construct strains that were heterozygous for pcc1 but homozygous for the A mating type genes. This can be done by selecting somatic diploid strains from uninucleate oidia formed on heterokaryons between sexually incompatible homokaryons having the same A and B genes (common AB). We constructed a common-AB diploid between 5337#1F1#24 (A2B2 pcc1-1 met4-1) and 5034 (A2B2 cho1-1), and we examined the mycelium for pseudoclamp formation. We found only rare pseudoclamps on the diploid mycelium and concluded that pcc1-1 is a recessive mutation.
We made a linkage analysis of pcc1-1 using auxotrophic markers, and we found that pcc1-1 is linked to trp2-1 and arg3-1 at map distances of 0.6% (2/171) and 5.1% (6/118), respectively. The two markers are both in the linkage group IV of the Japanese map of this fungus (![]()
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Cloning of pcc1:
To clone the pcc1 gene, we constructed a cosmid library of chromosome V and screened it for a clone that complements the pcc1-1 mutation by transformation using a double mutant (5337#1F1#28) carrying the pcc1-1 and trp1-1,1-6 mutations as a recipient. In these experiments, we first obtained Trp+ transformants and then screened them for a clone that suppressed pseudoclamp formation. The Trp+ transformants were transferred and grown on MY medium for ~48 hr at 42° before examination for complementation of pseudoclamp connection formation because we found that hyphae regenerated from protoplasts of pcc1-1 strains sometimes failed to exhibit pseudoclamps when grown at 28°, but all generated hyphae formed pseudoclamps when grown at 42°. We identified a single clone, 6E4, that complemented the pcc1-1 mutation: 57% (8/14) of transformants with 6E4 did not exhibit pseudoclamps in their colonies.
The possibility existed that the disappearance of pseudoclamp connections in the transformants was caused by the instability of the pseudoclamp phenotype in the pcc1-1 mutant: oidia derivatives from pcc1-1 strains sometimes failed to exhibit pseudoclamp connections abundantly (data not shown). To rule out this possibility, a transformant exhibiting the Pcc+ phenotype (and therefore lacking pseudoclamps) was crossed to the wild-type homokaryon 5302, and 43 progeny were examined for the presence or absence of pseudoclamp connections. Nine of the 43 progeny exhibited the pseudoclamped Pcc- phenotype. The result fitted well with the proportion (1:3) expected when the cosmid clone (6E4) was integrated in a chromosome other than chromosome V, on which pcc1 is located (P = 0.700.50). This supported the idea that the transformants exhibiting no pseudoclamp connections result from ectopic integration of pcc1.
To define the region of pcc1 in the cosmid clone (6E4), cotransformations were performed with fragments from 6E4 mixed with an intact pCc1003 plasmid vector containing the C. cinereus trp1 gene. We found that the 5.5-kb KpnI-XbaI fragment complemented the pcc1-1 mutation. We further defined the active region within a 2.5-kb fragment by truncation (Figure 2).
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Mapping of a DNA fragment containing pcc1:
To determine whether the cloned gene represents the pcc1 locus, RFLP analysis was performed. Eight progeny with pseudoclamps and eight progeny without pseudoclamps were chosen at random from the progeny of the cross between the wild-type homokaryon, KF2#1, and the pcc1-1 mutant, 5337#1. Genomic DNAs from the progeny were examined for an RFLP using a fragment from pKp5402 (see Figure 2) as a probe. We found that the presence or absence of pseudoclamps completely cosegregated with the RFLP (Figure 3), providing evidence that this clone does not contain an extragenic suppressor. With the small number of progeny analyzed, however, the possibility could not be ruled out that the cloned fragment contains a suppressor gene located 5.36.3 cM (1/16) from pcc1.
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Sequence analysis of pcc1:
Sequence analysis and database searches using the BLAST procedure (![]()
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Sequencing of the pcc1-1 mutant allele:
To obtain a clone carrying the pcc1-1 allele, we screened a cosmid library of mutant chromosome V for a clone that could amplify with a pair of sense and antisense primers that were used for amplification of the pcc1 cDNA. We used the process of sib selection, in which progressively smaller pools of clones were amplified, to isolate an individual clone, termed 8D2, which contained the pcc1-1 gene. We subcloned and sequenced overlapping fragments from the clone 8D2, which covered the whole length of the pcc1-1 allele. Comparison of the sequence of the pcc1-1 allele with that of the wild-type pcc1 revealed that in the mutant allele, the C at position 1025 was changed to A, resulting in a nonsense mutation at serine 211 that would truncate the Pcc1 protein 351 amino acid residues from its C-terminal end.
Interaction between the mating-type genes and pcc1:
Using a 1.6-kb SmaI fragment from pKp5402 genomic fragment, which contains most of the pcc1 gene (Figure 2), as a probe, we examined total RNAs from the wild-type homokaryon, the wild-type dikaryon, and two homokaryons in which the A- or the B-regulated pathways were independently activated, an A-on B-off homokaryon and an A-off B-on homokaryon, and the pcc1-1 mutant homokaryon (Figure 5). The A-on B-off homokaryon and the A-off B-on homokaryon were constructed by transforming the A43B43 homokaryon with the A42 and B42 loci, respectively (see Table 1). We identified a transcript of ~2 kb in all the strains. The transcription of pcc1 was higher in the dikaryon than in the homokaryon. The transcription level was also higher in the A-on B-off and A-off B-on strains, indicating that both sets of mating type genes play a role in regulating pcc1 transcription either directly or indirectly. The mutation in pcc1 had no effect on its own transcription, and similar levels of transcript were detected in the wild-type and pcc1 homokaryons.
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| DISCUSSION |
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The transformation of homokaryotic hyphae to hyphae with pseudoclamp connections without mating has been reported to occur by mutation of the A gene in C. cinereus and S. commune (![]()
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Cloning and sequencing of the pcc1 gene, together with the analysis of the cDNA, revealed an ORF encoding a protein of 561 amino acid residues, and database searches revealed that the protein contains an HMG box motif. It has been reported that some of the ascomycetous mating-type genes encode proteins with HMG boxes: they include mat-Mc of the fission yeast Schizosaccharomyces pombe (![]()
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Sequencing of the pcc1-1 mutant allele revealed that the mutant carries a nonsense mutation at the codon for serine 211, a residue located between the HMG box and the C terminus. The fact that the pcc1 mutation is recessive and that the gene is expressed in the homokaryon, albeit at low levels, suggests that the Pcc1 protein may be a repressor of a pathway leading to pseudoclamp formation in the homokaryon, where the HD1-HD2 A protein heterodimer is absent. If this is the case, the HD1-HD2 heterodimer should in some way release repression by Pcc1. Alternatively, Pcc1 may play a part in activating a gene in the pathway leading to pseudoclamp formation in cooperation with the HD1-HD2 heterodimer. The mutant Pcc1 protein may be able to bind to the promoter of a presumed target gene in such a way that it activates transcription of the gene in the absence of the HD1-HD2 heterodimer. The pcc1-1 mutant product still has the potential to bind the promoters of genes that it regulates because the HMG box and the predicted nuclear localization signal are contained in the truncated protein. It has been shown for the mta-1 protein of N. crassa that the HMG box is necessary and sufficient for binding to DNA in vitro (![]()
We showed that the transcription of pcc1 is upregulated by a compatible B mating type gene interaction. The B mating type genes of C. cinereus (![]()
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It is remarkable that a single gene mutation in pcc1 leads to a complete program of sexual differentiation, including fruit body formation, meiosis, and spore production. pcc1 clearly plays a role in the A-regulated pathway of sexual development in that it is directly implicated in promoting clamp cell development. We also observed that pcc1 was up-regulated when the A protein heterodimer was present. The fact that it is also involved in effecting the pheromone response suggests that it might play an important role in coordinating the activities of the A and B genes. A more detailed examination of the way in which pcc1 mediates cross-talk between the A and B pathways is now in progress and may help us to understand more fully the molecular mechanisms underlying sexual development in homobasidiomycetes.
| ACKNOWLEDGMENTS |
|---|
We thank Professor LORNA A. CASSELTON for discussion during the work, for the donation of C. cinereus strains as listed in Table 1, and for critical reading of the manuscript. This work was supported by a Grant-in-Aid for Scientific Research (grant 08680794) from the Ministry of Education, Science and Culture of Japan (to T.K.) and by grant GM43930 from National Institutes of General Medical Sciences (to M.E.Z.).
Manuscript received February 25, 1998; Accepted for publication April 28, 1998.
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T. Y. James, P. Srivilai, U. Kues, and R. Vilgalys Evolution of the Bipolar Mating System of the Mushroom Coprinellus disseminatus From Its Tetrapolar Ancestors Involves Loss of Mating-Type-Specific Pheromone Receptor Function Genetics, March 1, 2006; 172(3): 1877 - 1891. [Abstract] [Full Text] [PDF] |
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Y. Liu, P. Srivilai, S. Loos, M. Aebi, and U. Kues An Essential Gene for Fruiting Body Initiation in the Basidiomycete Coprinopsis cinerea Is Homologous to Bacterial Cyclopropane Fatty Acid Synthase Genes Genetics, February 1, 2006; 172(2): 873 - 884. [Abstract] [Full Text] [PDF] |
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S. H. Namekawa, K. Iwabata, H. Sugawara, F. N. Hamada, A. Koshiyama, H. Chiku, T. Kamada, and K. Sakaguchi Knockdown of LIM15/DMC1 in the mushroom Coprinus cinereus by double-stranded RNA-mediated gene silencing Microbiology, November 1, 2005; 151(11): 3669 - 3678. [Abstract] [Full Text] [PDF] |
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K. Inada, Y. Morimoto, T. Arima, Y. Murata, and T. Kamada The clp1 Gene of the Mushroom Coprinus cinereus Is Essential for A-Regulated Sexual Development Genetics, January 1, 2001; 157(1): 133 - 140. [Abstract] [Full Text] |
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U. Kues Life History and Developmental Processes in the Basidiomycete Coprinus cinereus Microbiol. Mol. Biol. Rev., June 1, 2000; 64(2): 316 - 353. [Abstract] [Full Text] [PDF] |
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