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UV Light Induces IS10 Transposition in Escherichia coli
Zehava Eichenbauma and Zvi Livnehaa Department of Biological Chemistry, Faculty of Biochemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
Corresponding author: Zvi Livneh, Dept. of Biological Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel, bclivneh{at}weizmann.weizmann.ac.il (E-mail).
Communicating editor: R. MAURER
| ABSTRACT |
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A new mutagenesis assay system based on the phage 434 cI gene carried on a low-copy number plasmid was used to investigate the effect of UV light on intermolecular transposition of IS10. Inactivation of the target gene by IS10 insertion was detected by the expression of the tet gene from the phage 434 PR promoter, followed by Southern blot analysis of plasmids isolated from TetR colonies. UV irradiation of cells harboring the target plasmid and a donor plasmid carrying an IS10 element led to an increase of up to 28-fold in IS10 transposition. Each UV-induced transposition of IS10 was accompanied by fusion of the donor and acceptor plasmid into a cointegrate structure, due to coupled homologous recombination at the insertion site, similar to the situation in spontaneous IS10 transposition. UV radiation also induced transposition of IS10 from the chromosome to the target plasmid, leading almost exclusively to the integration of the target plasmid into the chromosome. UV induction of IS10 transposition did not depend on the umuC and uvrA gene product, but it was not observed in lexA3 and
recA strains, indicating that the SOS stress response is involved in regulating UV-induced transposition. IS10 transposition, known to increase the fitness of Escherichia coli, may have been recruited under the SOS response to assist in increasing cell survival under hostile environmental conditions. To our knowledge, this is the first report on the induction of transposition by a DNA-damaging agent and the SOS stress response in bacteria.
TRANSPOSABLE elements are widespread among organisms and fulfill an important role in evolution of the genome (![]()
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IS10R, the right module of the bacterial transposon Tn10, can function either as an individual insertion sequence (IS) or it can mediate transposition of the whole Tn10 element. The transposase, the only protein encoded by IS10, catalyzes both Tn10 and IS10 transposition in a nonreplicative manner (![]()
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We have recently developed a new mutagenesis assay system that monitors the inactivation of the phage 434 cI gene carried on a low-copy plasmid (![]()
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| MATERIALS AND METHODS |
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Materials:
Sources were as follows: restriction endonucleases, New England Biolabs (Beverly, MA); radiolabeled materials, multiprime labeling kit, and Hybond-N nylon membranes, The Radiochemical Center, Amersham (Arlington Heights, IL); antibiotics, Sigma (St. Louis); bacterial media, Difco (Detroit).
Media:
The medium used in this study was LB (Luria-Bertani), containing Bacto-trypton 10 g/liter; Bacto-yeast extract 5 g/liter; and NaCl 5 g/liter. Kanamycin (70 mg/liter), ampicillin (100 mg/liter), tetracycline (5 mg/liter), and chloramphenicol (30 mg/liter) were supplemented as required. Dilution and irradiation of bacteria were done in buffer PS (10 mM NaH2PO4 and 150 mM NaCl, pH 7.0).
Bacterial strains and plasmids:
The strains used in this study are listed in Table 1. Plasmid pZF42 carries the origin of replication of the F episome, the cat gene, the cI(434) gene, and the tet gene fused to the ORPR operator-promoter of phage 434 (![]()
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cro gene, the bla and kan genes, and the origin of replication of plasmid pBR322. pMVIS10 contains an IS10 insertion in cro, whereas pMV05 carries a point mutation in cro.
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Preparation, fractionation, and hybridization of DNA:
Rapid preparation of chromosomal DNA was done according to ![]()
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UV-induced survival and mutagenesis:
Cells containing plasmid pZF42 were grown to early log at 37° on LB supplemented with chloramphenicol. The cells were concentrated fivefold in buffer PS, after which 4-ml portions were UV irradiated on ice using a low pressure mercury germicidal lamp (254 nm). The dose rate was 0.1 J m-2 s-1, as determined by a UV products radiometer equipped with a UVX-25 sensor. UV survival was determined by plating the appropriately diluted cultures on LB plates containing chloramphenicol. In order to determine mutation frequency, UV-irradiated cells were diluted 1:26 in LB, incubated for 90 min at 37°, and then harvested and resuspended in buffer PS. Determination of the total number of cells was done on LB plates containing chloramphenicol and the selection for TetR mutant colonies was done on LB plates containing chloramphenicol and tetracycline. Experiments for UV-induced interplasmid transposition of IS10 were performed in the same way, except that the cells harbored both plasmids pZF42 and pMVIS10, and the growth medium contained both chloramphenicol and kanamycin. Determination of the total number of cells was done on LB plates containing chloramphenicol and kanamycin, and the selection for TetR mutant colonies was done on LB plates containing chloramphenicol, kanamycin, and tetracycline. Mutation frequency is defined as the number of TetR colonies divided by the total number of colonies.
| RESULTS |
|---|
The experimental system:
Our mutagenesis assay system monitors inactivation of the cI(434) gene carried on a low-copy number plasmid, containing the F episome origin of replication. This plasmid, termed pZF42, carries the cat gene as a selective marker, the cI(434) gene, and the tet gene fused to the ORPR operator-promoter of phage 434 (![]()
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As the first step we tested the response to UV radiation in the absence of the donor plasmid, of E. coli cells harboring the target plasmid. Exponentially growing cells harboring plasmid pZF42 were UV irradiated, after which they were grown up to 180 min without selection in order to enable cell recovery and expression of UV-inducible functions. As expected, UV irradiation caused inhibition of cell division (reviewed in ![]()
UV-induced mutations in cI(434) were examined in E. coli MC4100, an E. coli K-12 derivative (Figure 1). As can be seen, UV irradiation caused an increase of mutation frequency of up to 60-fold over the spontaneous mutation frequency at a dose of 40 J m-2, where survival was still relatively high (60%; Figure 1). UV mutagenesis in E. coli depends on the regulators of the SOS stress response, RecA and LexA, and on the UmuD and UmuC gene products (![]()
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UV radiation increases interplasmid IS10 transposition in a umuC strain:
The effect of UV radiation on interplasmid transposition of IS10 was examined using cells harboring the acceptor plasmid pZF42 and the donor plasmid pMVIS10. In order to reduce the "background" of regular umuC-dependent UV mutagenesis we utilized a strain carrying the umuC36 mutation (Figure 1D). UV irradiation of TK702(pZF42; pMVIS10) cells led to an increase of up to 22-fold in the frequency of TetR mutants (Figure 2). Control experiments conducted with plasmid pMV05, which contained no IS elements, led to a small increase of only threefold in the mutation frequency, as expected for a umuC strain (Figure 2). This suggested that the UV-induced increase of TetR mutants in TK702(pZF42; pMVIS10) is related to IS10.
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In order to examine the type of events that caused the TetR mutations, the plasmids were extracted from TetR colonies and analyzed by agarose gel electrophoresis followed by Southern blot hybridization. We have previously shown that every IS10 transposition from pMVIS10 to pZF42 led to the formation of a cointegrate structure, composed of the fused acceptor and donor plasmids, and two copies of IS10 (![]()
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Figure 4 shows the plasmid content of TetR colonies obtained after UV irradiation of TK702(pZF42; pMVIS10). Approximately half of the TetR mutants contained high molecular weight and high copy number DNA species, typical of cointegrates formed by interplasmid transposition, e.g., lanes 69 in Figure 4. Such structures were not observed when UV-induced TetR colonies of cells harboring pZF42 and the control plasmid pMV05 were analyzed. Further analysis was performed by digesting the plasmids with BamHI and XhoI, and subjecting them to Southern blot hybridization with radiolabeled IS10 or pZF42 probes. As can be seen in Figure 5, two bands of 6.65 and 3.62 kbp, characteristic of cointegrate structure (![]()
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UV radiation increases interplasmid IS10 transposition in wild-type and uvrA strains, but not in
recA or lexA3 strains:
Does UV radiation induce IS10 transposition also in a wild-type strain? We irradiated AB1157 cells harboring both the target plasmid pZF42 and the donor plasmid pMVIS10 and analyzed the TetR mutants as before. UV irradiation caused a sharp increase TetR mutants (Table 2). Analysis of the plasmids in these mutants by agarose gel electrophoresis and Southern blot hybridization revealed that most of the mutations were point mutations, as expected in a UmuC+ strain. However, along with the increase in point mutations, a 27-fold increase in IS10 transposition was observed (Table 2). The extent of the increase in IS10 transposition was threefold higher in the wild-type strain AB1157 (27-fold) as compared to the umuC36 mutant (ninefold); This may result from strain variation, since TK702 and AB1157 are not isogenic.
We examined the effect of UV radiation on IS10 transposition in
recA and lexA3 strains, in which the SOS stress response cannot be induced. We found no induction of IS10 transposition in these strains (Table 3), suggesting that UV induction of IS10 transposition depends on the SOS response. Due to the extreme UV sensitivity of the recA and lexA mutants (![]()
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recA strains. This strongly suggests that UV-induced transposition of IS10 is regulated by the SOS stress response.
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UV radiation increases chromosome-to-plasmid transposition of IS10:
We examined whether transposition of chromosomal IS10 elements is also induced by UV radiation. This was done with E. coli RKZ2, which carries two chromosomal IS10 elements (but not the tet gene). UV irradiation of RKZ2 cells harboring pZF42 led to a pronounced increase in the TetR mutation frequency. Analysis of TetR mutants revealed that transposition of IS10 from the chromosome to plasmid pZF42 was induced by UV up to 28-fold at a UV dose of 30 J m-2 (Table 2). Thus, the induction of intermolecular IS10 transposition is not limited to plasmids only, and occurs also with chromosomal IS10 elements. As in the spontaneous mutagenesis experiments (![]()
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| DISCUSSION |
|---|
A major feature of transposons is their activity as mutagenic agents which are activated under conditions in which fast genetic changes and adjustment to the changing environment are needed (![]()
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In E. coli the response to DNA-damaging agents is controlled primarily by the SOS regulatory network, which functions to increase survival under adverse environmental conditions (![]()
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The results presented in this study are, to our knowledge, the first report on the induction of transposition in E. coli under the control of the SOS stress response, by a DNA-damaging agent. It should be noted that the UV induction of IS10 transposition was observed with IS10 residing either on a plasmid or in the chromosome, suggesting that it is not limited to a particular donor. The insertion sites were not analyzed yet, and from the Southern hybridization data it is difficult to estimate whether there are many insertion sites. However, in our previous study with this system we have shown that there were at least two insertion sites in the acceptor plasmid (![]()
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The fact that UV induction of IS10 was not observed in recA and lexA(Ind-) strains suggests that DNA damage alone is not sufficient, and that one or more SOS-regulated proteins are required. Since there is no LexA-binding site in the coding sequence of IS10, this dependence on SOS must be indirect. The integration host factor (IHF), known to be involved in a multiplicity of processes in E. coli including regulation of gene expression, integration of phage
, and transposition of IS1 (![]()
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As mentioned above, the SOS stress response induces a DNA-dependent mutator activity as part of a multi-system rescue operation for E. coli populations challenged by environmental stress (![]()
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| ACKNOWLEDGMENTS |
|---|
This work was supported by the Forchheimer Center for Molecular Genetics. We thank TAMAR PAZ-ELIZUR, YOAV BARAK and ARIE SEGAL for their help.
Manuscript received September 22, 1997; Accepted for publication March 25, 1998.
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) and TetR mutagenesis (
). (B and C) The isogenic strains AB1157 (
) were UV irradiated and assayed for cell survival (B) and for TetR mutagenesis (C). (D) Strains TK701 (
), each harboring plasmid pZF42, were UV irradiated and assayed for TetR mutagenesis.









