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The Mutation Rate and Cancer
Aimee L. Jacksona and Lawrence A. Loebaa Joseph Gottstein Memorial Cancer Research Laboratory, Department of Pathology, University of Washington, Seattle, Washington 98195
Corresponding author: Lawrence A. Loeb, Box 357705, University of Seattle, Department of Pathology, 1959 NE Pacific, Seattle, WA 98195, laloeb{at}u.washington.edu (E-mail).
| ABSTRACT |
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The stability of the human genome requires that mutations in the germ line be exceptionally rare events. While most mutations are neutral or have deleterious effects, a limited number of mutations are required for adaptation to environmental changes. DRAKE has provided evidence that DNA-based microbes have evolved a mechanism to yield a common spontaneous mutation rate of ~0.003 mutations per genome per replication (![]()
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CANCER is a multistage process that evolves over many years and is characterized by a series of chromosomal changes (![]()
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| Cancer cells exhibit a mutator phenotype |
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Human cancers frequently exhibit many chromosomal abnormalities. ![]()
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We have asked what is the contribution of spontaneous mutations to the multiple mutations that are found in human cancers. Estimates of the spontaneous mutation rates in human cells have been mainly obtained from studies on cells grown in culture. The spontaneous mutation of a human diploid lymphoblast cell line, TK6, heterozygous for thymidine kinase and containing one copy of hypoxanthine-guanine phosphoribosyltransferase has been measured extensively. The mutation rates for both genes are approximately 2.0 x 10-7 mutations/gene/division (![]()
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In the absence of selection or clonal proliferation, one can estimate the number of spontaneous mutations that could accumulate in stem cells with the potential to proliferate into a tumor. Based on studies in human bone marrow, it has been estimated that only 0.002% of the cells can form colonies with high proliferative potential (![]()
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Cancer cells contain much larger numbers of mutations, many of which may not be rate-limiting for the development of a tumor. Even at the cytologic level, many cancers have multiple mutations, and a greater number of changes may be present at the level of DNA sequence. We have argued that these multiple mutations could not be the result of spontaneous mutation rates, but instead must be a manifestation of a mutator phenotype. A mutator phenotype could result from the inactivation or dysregulation of any of a number of putative genomic stability genes. Among these are genes involved in DNA repair, DNA replication, chromosomal segregation, and cell cycle checkpoints. The elimination or decreased efficiency of these genomic stability functions could produce an increased overall mutation rate in the affected cell. As a consequence, the cell would be predisposed to the accumulation of further mutations which could contribute to cancer progression.
| Clonal expansion and somatic selection contribute to the increased mutation rate |
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Repetitive rounds of clonal expansion of cells within a tumor can be an important factor in contributing to the increased number of mutations (![]()
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Despite the above theoretical argument, clonal expansion in the absence of enhanced mutagenesis is unlikely to account for the large number of mutations observed in many cancers, because each mutation would have to exhibit a proliferative advantage. Even a mutation in one of the two alleles of a tumor suppresser gene would have to confer a proliferative advantage to cells harboring that mutation. Given that most mutations identified in cancer cells are recessive for tumorigenesis (![]()
| Microsatellite instability provides evidence for a mutator phenotype |
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The first strong evidence for the hypothesis that cancer cells harbor mutations in genome stability genes and manifest a mutator phenotype was provided by the demonstration that cells from patients with HNPCC (hereditary non-polyposis colon cancer) harbor mutations in mismatch DNA repair genes (![]()
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This demonstration of a linkage between microsatellite instability and widespread genomic instability in HNPCC has led to multiple studies on the occurrence of this form of genomic instability in sporadic cancers. Different types of sporadic cancers that have been demonstrated to display microsatellite instability include: colon cancer (![]()
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Instability of repetitive sequences within transcribed genes:
In addition to serving as an indicator mutation for genomic instability, instability of repetitive DNA sequences may contribute directly to the cancer phenotype. Recently, a number of genes implicated in the development or progression of cancer have been found to contain repetitive sequences within their coding regions (Table 2). Changes in the lengths of these repetitive sequences frequently results in gene inactivation, usually by truncation of these gene products, thereby enhancing the progression of the cancer phenotype. The TGF-ß receptor II inhibits growth of epithelial tissues in response to the growth suppresser TGF-ß (![]()
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The APC (adenomatous polyposis coli) gene is mutated in familial polyposis coli and is believed to be an early mutation during tumor progression in sporadic colon cancer (![]()
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BAX is a member of the Bcl2 family of apoptosis genes transactivated by p53 in response to DNA damage (![]()
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These findings of inactivating frameshift mutations at microsatellite sequences within the coding regions of genes involved in tumorigenesis bear directly on the hypothesis that microsatellite instability serves as an indicator mutation for genomic instability (![]()
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Microsatellite instability is an early step in carcinogenesis:
In order for a mutator phenotype to be a driving force in tumor progression, it would have to occur as an early event. An initial mutation in a key stability pathway such as DNA replication, DNA repair, or cell cycle checkpoints, could decrease the fidelity of these processes. As a result, each subsequent round of DNA replication could result in an increase in mutations throughout the genome. Among these mutations would be mutations in other genes involved in maintaining genomic stability, thereby further increasing the accumulation of mutations and advancing the cancer phenotype. Thus, a mutator phenotype provides a positive feedback mechanism for the exponential accumulation of mutations during tumor progression.
The hypothesis that the mutator phenotype is an early event in tumorigenesis (![]()
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Additional support for microsatellite instability as an early event is its presence in aberrant crypt foci, microscopic lesions of the colon thought to be the earliest identifiable precursors of colon cancer (![]()
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Also consistent with a mutator phenotype as an early event in tumor progression are the observations that microsatellite instability can be detected in chronic inflammatory disease associated with a high incidence of cancer. For instance, patients with chronic pancreatitis are at an increased risk for the development of pancreatic cancer. It has been reported that cells in pancreatic juice from patients with pancreatitis or pancreatic cancer demonstrate microsatellite instability (![]()
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| Mutators can arise in non-dividing cells |
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The concept of a mutator phenotype is based upon the assumption that mutations arise in dividing cells and that the mutation rate in these cells is insufficient to produce the large numbers of mutations found in human cancers. An alternative hypothesis has been proposed by ![]()
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| The coupling of clonal selection with the induction of mutators |
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Both genetic instability and clonal selection are likely to contribute to the emergence of a mutator phenotype in cancer. Moreover, genetic instability and clonal selection may be tightly linked and interdependent. Most environmental carcinogens are mutagens. These agents induce mutations throughout the genome. Among the mutations would be those that generate genetic instability. Thus, selection for mutations in a population would also result in the selection of mutators. By this logic, clonal selection for mutants would result in an enrichment of mutators within the population. During the course of subsequent divisions, further mutations could be generated, among which could be more mutators. Selection for a mutant phenotype in a cell population can greatly increase the proportion of mutators in the selected population. Even the very low level of mutators that occur spontaneously can be dramatically increased during selection.
This has been demonstrated several times, most recently by ![]()
Let us consider these experiments in the context of tumor progression. Following an initial mutagenic event, the frequency of mutators in a population of cells undergoing sequential rounds of selection (for uncontrolled growth, escape from tumor progression, etc.) could rapidly increase. Selection can occur in the form of the normally restrictive blocks to cell division and tumor progression which function in normal cells. These blocks include limitation for nutrients, decreased oxygen levels, decreased pH, and contact inhibition (Figure 1). The recent results by ![]()
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Mutators may be required by tumors to adapt to changing environments. ![]()
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| Conclusion |
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DNA replication is a very accurate process in normal human cells. This consistency of DNA replicative processes is reinforced by the studies of DRAKE that establish in DNA-based microbes and RNA viruses a specific rate of mutations per nucleotide per generation. In contrast, there is increasing evidence to suggest that this accuracy is diminished during the development of cancers. As a result, cancers are likely to express a mutator phenotype early in their evolution. Quantitation of the number of mutations that a tumor accumulates may be important for both diagnosis and prognosis. To do this, will require new methodologies for the measurement of random mutations in DNA.
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