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Evidence for Genetic Hitchhiking Effect Associated With Insecticide Resistance in Aedes aegypti
Guiyun Yana, Dave D. Chadeeb, and David W. Severson1,aa Department of Animal Health and Biomedical Sciences, University of Wisconsin, Madison, Wisconsin 53706
b Insect Vector Control Division, Ministry of Health, St. Joseph, Trinidad and Tobago, West Indies
Corresponding author: Guiyun Yan, Department of Biological Sciences, State University of New York, 109 Cooke Hall, Buffalo, NY 14260, gyan{at}calshp.cals.wisc.edu (E-mail).
Communicating editor: A. G. CLARK
| ABSTRACT |
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Information on genetic variation within and between populations is critical for understanding the evolutionary history of mosquito populations and disease epidemiology. Previous studies with Drosophila suggest that genetic variation of selectively neutral loci in a large fraction of genome may be constrained by fixation of advantageous mutations associated with hitchhiking effect. This study examined restriction fragment length polymorphisms of four natural Aedes aegypti mosquito populations from Trinidad and Tobago, at 16 loci. These populations have been subjected to organophosphate (OP) insecticide treatments for more than two decades, while dichlor-diphenyltrichlor (DDT) was the insecticide of choice prior to this period. We predicted that genes closely linked to the OP target loci would exhibit reduced genetic variation as a result of the hitchhiking effect associated with intensive OP insecticide selection. We also predicted that genetic variability of the genes conferring resistance to DDT and loci near the target site would be similar to other unlinked loci. As predicted, reduced genetic variation was found for loci in the general chromosomal region of a putative OP target site, and these loci generally exhibited larger FST values than other random loci. In contrast, the gene conferring resistance to DDT and its linked loci show polymorphisms and genetic differentiation similar to other random loci. The reduced genetic variability and apparent gene deletion in some regions of chromosome 1 likely reflect the hitchhiking effect associated with OP insecticide selection.
MOSQUITOES are important vectors for several human pathogens because of their close association with humans. Mosquito habitats often change rapidly as a result of vector control efforts; therefore, successful adaptation to varying human habitats is essential for mosquito reproduction. Adaptation ability of an organism depends on its genetic variability. Information on genetic variation within and between populations is critical for understanding the evolutionary history of mosquito populations and disease epidemiology (![]()
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A. aegypti is an important vector of yellow fever and dengue fever viruses in many tropical countries, including Trinidad and Tobago, West Indies. Control efforts for A. aegypti have focused primarily on habitat reduction and chemical treatment, which is based on the destruction of breeding sites and the use of insecticides, including dichlor-diphenyltrichlor (DDT) in the 1950s and several organophosphates (OP) since the 1960s. The wide use of insecticides has been a powerful selection agent, and rapid development of resistance to DDT and OPs is well documented (![]()
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| MATERIALS AND METHODS |
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Natural history of A. aegypti in Trinidad and Tobago:
It is generally believed that domestic A. aegypti originated from an African sylvan ancestor, and was introduced to the New World from West Africa via transoceanic trade during the fifteenth to seventeenth centuries (![]()
In the 1950s, intensive vector control programs aimed toward mosquito eradication were adopted, primarily by the widespread usage of DDT. In the early 1960s, Trinidad was considered free of A. aegypti, but was reinfested in 1962. Overall, mosquito populations in Tobago have been exposed to fewer insecticides than Trinidad populations. A. aegypti is now widely distributed in Trinidad and Tobago, despite continued intensive vector control efforts through the use of OP insecticides. Insecticide applications not only impose strong selection on the target loci, but also lead to recurrent reductions of population sizes.
Collection of samples:
In conjunction with the A. aegypti surveillance program, in April, 1995, we collected three geographically-distinct samples from Trinidad and one sample from Tobago (Figure 1). These four villages share similar climates, including temperature and the annual amount of rainfall. For each village, 100 ovitraps were distributed, and about half of the village's residential area was covered (approximately two traps every five houses). Each ovitrap consisted of a black plastic container roughly half-filled with water into which a rectangular masonite strip was placed in an upright manner. Female A. aegypti mosquitoes will readily oviposit on the masonite strip, near the water interface. After 23 days, the masonite strips were removed, transported to the laboratory, where attached eggs were allowed to hatch, and reared into adults. All adults were identified as A. aegypti by microscopic examination, and were frozen for subsequent DNA analysis. Previous studies with A. aegypti in Puerto Rico suggest that the mean number of families represented per ovitrap was 4.7 (e.g., several female mosquitoes frequently oviposit in the same container; ![]()
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RFLP and probe selection:
We genotyped a total of 870 mosquitoes for four populations (n = 150 for Curepe, 262 for Couva, 258 for San Fernando, and 200 for Tobago). DNA extraction from individual mosquitoes, digestion with EcoRI, Southern blotting and hybridization were as previously described (![]()
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Data analysis:
DNA polymorphism and Hardy-Weinberg equilibrium (HWE) tests: Molecular weights of fragments detected by each clone were estimated by comparing them to lambda-HindIII digest standards included on each gel, using the Eagle Sight image capture and analysis software (Stratagene, La Jolla, CA). DNA polymorphisms may be measured by the proportion of polymorphic loci, number of alleles, and heterozygosity. Conformance with HWE was tested using the probability test for each locus and each population, using the GENEPOP computer program (![]()
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Population genetic structure, gene flow and genetic distance: Population genetic structure was examined with Wright's F-statistics, based on the procedure of ![]()
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Gene flow (Nm) was estimated from the standardized-among-population genetic variance (FST) estimate of each locus using the relationship Nm = (1/FST - 1)/4, where N is the effective population size of a deme, and m is the rate of gene flow (![]()
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| RESULTS |
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DNA polymorphisms and HWE tests:
Fifteen cDNA markers examined in this study were all polymorphic. The RFLP patterns of one marker (LF250) indicate that this marker represents a gene duplication (data not shown), and therefore, the 15 markers represented a total of 16 loci. A total of 91 unique alleles were identified, 68 alleles (74.7%) were common to all four populations. The average number of alleles was about five per locus (Table 1). Six loci (LF198, ARC1, LF250a, para, LF168 and Mal I) exhibited private alleles, and five private alleles were in the Tobago population. An excess of rare alleles was found: 16 alleles (18%) had a frequency less than 0.05. Under the infinite alleles model (equation 8.24; ![]()
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In general, high heterozygosity was observed in all four mosquito populations, except at the LF90 locus. The LF90 locus showed significantly lower heterozygosity than the other 15 loci examined (Table 1; ANOVA, t = 8.37, d.f. = 1, P < 0.0001). The most heterozygous loci were LF178 on chromosome 1 and LF282 on chromo-some 2. The high heterozygosity at the LF178 locus does not seem to be a result of sex linkage (see Figure 2), because males and females showed similar heterozygosity (data not shown). Population average heterozygosity over all 16 loci varied little among populations (ranged from 0.582 for Couva to 0.627 for Tobago), and such variations were not statistically significant (Table 1; ANOVA, F = 1.08, d.f. = 3, 49, P > 0.05). Heterozygosity is not correlated with the mean size of restriction fragments weighted by frequencies at a locus (r = 0.22, d.f. = 15, P > 0.05), but seems to correlate with the number of observed alleles (r = 0.49, d.f. =15, P = 0.052).
The genotype frequencies at several loci did not conform to HWE. Loci on chromosome 2 generally exhibited a heterozygote excess, but loci on chromosome 3 that showed HWE distortion exhibited a heterozygote deficit (Table 1). The FIS values varied greatly among the loci, suggesting no systematic inbreeding occurred in these populations. The average FIS over all loci was not significantly different from 0 for each population (Table 1). Departure from HWE probably reflects either the effect of insecticide selection on some loci linked to the resistance loci, or simply sampling error.
Population genetic structure, gene flow and genetic distance:
Analysis of F statistics for the three Trinidad populations found small, but statistically significant FST estimates for all loci (Table 2), suggesting that these populations are genetically differentiated. FST estimates showed a six-fold difference among loci, with an average FST over all loci of 0.043. When the Tobago population was included in the analysis, the basic pattern of FST estimation among the loci was not altered (Table 2). As expected, slightly larger FST values were obtained for most loci, and the average FST over all loci was 0.056. The para locus exhibited similar polymorphism and genetic differentiation as other random loci.
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Assuming that the populations are at an equilibrium between migration and random drift, the average number of migrants exchanged per generation can be calculated. Average gene flow (Nm) among the four populations, based on the FST method, was 4.2 migrants per generation (95% confidence interval: 3.25.7). This estimate was similar to the estimate based on the average frequency of six private alleles present in the populations (Nm = 4.5). Table 3 shows genetic distances and gene flow between each pair of populations calculated from the pair-wise average FST . A large gene flow between the Tobago and Trinidad populations was detected. There was no significant correlation between genetic distance and geographic distance (r2 = 0.5, d.f. = 5, P > 0.05).
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Hitchhiking effect on DNA polymorphisms:
Genetic hitchhiking occurs when a (neutral) mutation changes frequency through genetic linkage to a mutation that is selected, resulting in reduced genetic variation surrounding the target site of selection. Low DNA polymorphism at the LF90 locus suggests that hitchhiking has probably occurred in the genome region of the EST-4 locus. We collected additional evidence to test for this hypothesis by examining genetic polymorphism at the LF230 locus, which also is in the general genomic region of EST-4 (Figure 2). An apparent chromosomal deletion event occurred around this locus in 4259% of the individuals (Figure 3), and low heterozygosity (0.070.29) was observed among those individuals without the apparent deletion (Table 1). However, substantial reduction of heterozygosity for the para locus and other loci in the vicinity of para was not observed (Table 1).
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| DISCUSSION |
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DNA polymorphisms of four A. aegypti mosquito populations were examined using RFLP markers. The Trinidad populations have been exposed to OPs every 34 months for about two decades. These populations have therefore experienced intense selection by insecticides, that probably resulted in periodic population bottlenecks. A population bottleneck maintains a long-term effect on population heterozygosity, even for species with a large intrinsic rate of growth such as A. aegypti (![]()
If recurrent population bottlenecks have occurred in the mosquito populations, low polymorphism for all loci in the genome would be expected. In contrast to the expectation, we observed high polymorphisms for most loci. For the same loci, average heterozygosities of the populations studied here are substantially higher than a laboratory population, which has not been exposed to insecticides for more than 20 years and has not experienced population bottleneck (![]()
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The LF90 locus consistently exhibited lower heterozygosity than other loci in the genome for the four populations used in this study. The heterozygosity of a RFLP locus may be influenced by several factors, including the size of the probes, the size of the regions being probed by the probes, reduced mutation or recombination rates in these genome regions, natural or artificial selection on a particular locus, and hitchhiking (selective sweep) of a selectively neutral locus by selectively favored substitutions at linked loci. We argue that the polymorphism pattern of the LF90 locus likely reflects the result of a hitchhiking effect. First, the putative function of the LF90 clone is coding for ribosomal protein S14 (![]()
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Our argument for a hitchhiking effect is strengthened by the RFLP data of the LF230 locus, which is linked to LF90 and also is in the general genomic region of EST-4. We found very low DNA polymorphism and an apparent gene deletion for many individuals at this locus, a phenomenon which has not been observed in other laboratory colonies of A. aegypti (![]()
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Ideally, the hitchhiking effect should be demonstrated at the nucleotide diversity level (![]()
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Gene flow estimates among the four mosquito populations were very high compared to other animal species (![]()
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In this study, we applied classical population genetic theory and molecular techniques to study the evolutionary consequences of insecticide utilization in medically-important field pest populations. We made specific predictions concerning gene polymorphisms and spatial variations based on the history of insecticide application. These predictions were then tested by RFLP analysis of loci representative of the mosquito genome. Our data were generally consistent with the predictions. We observed evidence for a hitchhiking effect in the general chromosomal region containing genes presumed to confer resistance to OPs. The hitchhiking effect was reflected by low DNA polymorphisms and gene deletions for loci surrounding the EST-4 locus gene region. Gene deletions and reduced genetic variability in genome regions of chromosome 1 may be the result of the hitchhiking effect associated with the spread of the amplified EST-4 gene, which increases the fitness of the mosquitoes in the OP environment (![]()
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| FOOTNOTES |
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1 Present address: Department of Biological Sciences, State University of Notre Dame, Notre Dame, IN 46556. ![]()
| ACKNOWLEDGMENTS |
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We thank M. FERO, M. KASSNER, V. KASSNER, L. SMITH and J. WALERAK for technical assistance. M. RAYMOND, W. J. TABACHNICK and D. ZAITLIN provided valuable discussions. We are grateful to J. F. CROW, C. DENNISTON, K. F. GOODNIGHT and two anonymous reviewers for critical review. This work was funded by a National Institutes of Health (NIH) National Research Service Award No. T32 (NIH grant AI-07414) to G.Y., and NIH grant AI-33127 to D.W.S.
Manuscript received April 3, 1997; Accepted for publication October 29, 1997.
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