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Isolation of a Schizosaccharomyces pombe rad21ts Mutant That Is Aberrant in Chromosome Segregation, Microtubule Function, DNA Repair and Sensitive to Hydroxyurea: Possible Involvement of Rad21 in Ubiquitin-Mediated Proteolysis
Kazuo Tatebayashia, Jun-ichi Katoa, and Hideo Ikedaaa Department of Molecular Biology, Institute of Medical Science, University of Tokyo, P.O. Takanawa, Tokyo 108, Japan
Corresponding author: Hideo Ikeda, Department of Molecular Biology, Institute of Medical Science, University of Tokyo, 4-6-1, Shirokanedai Minato-ku, P.O. Takanawa, Tokyo 108, Japan, ike{at}hgc.ims.u-tokyo.ac.jp (E-mail).
Communicating editor: F. WINSTON
| ABSTRACT |
|---|
The fission yeast DNA repair gene rad21+ is essential for cell growth. To investigate the function essential for cell proliferation, we have isolated a temperature-sensitive mutant of the rad21+ gene. The mutant, rad21-K1, showed abnormal mitosis at the nonpermissive temperature. Some cells contained abnormal nuclear structures, such as condensed chromosomes with short spindles, or chromosomes stretched or unequally separated by elongating spindles. Other cells exhibited the displaced nucleus or a cut-like phenotype. Similar abnormalities were observed when the Rad21 protein was depleted from cells. We therefore concluded that Rad21 is essential for proper segregation of chromosomes. Moreover, the rad21-K1 mutant is sensitive not only to UV and
-ray irradiation but to thiabendazole and hydroxyurea, indicating that Rad21 plays important roles in microtubule function, DNA repair, and S phase function. The relation to the microtubule function was further confirmed by the fact that rad21+ genetically interacts with tubulin genes, nda2+ and nda3 +. Finally, the growth of the rad21-K1 mutant was inhibited at the permissive temperature by introduction of another mutation in the cut9 + gene, coding for a component of the 20S cyclosome/anaphase promoting complex, which is involved in ubiquitin-mediated proteolysis. The results suggest that these diverse functions of Rad21 may be facilitated through ubiquitin-mediated proteolysis.
ADNA double-strand break repair system is important for cell proliferation because DNA is often damaged during mitosis by
rays and other DNA-damaging agents. DNA double-strand breaks are usually repaired by homologous and nonhomologous recombination (![]()
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More than 20 rad genes have been identified in fission yeast, and those are divided into three groups based on the sensitivity to UV and
rays (![]()
rays, are designated as the group 1 genes and the genes responsible for sensitivity to UV but not to
rays are named as the group 2 genes. The group 3 genes are the genes for sensitivity to
rays rather than UV irradiation. The rad21+ gene is a group 3 gene. The Rad21 protein is a nuclear protein that is involved in DNA double-strand break repair and that is phosphorylated during cell cycle (![]()
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In fission yeast, a number of conditionally lethal mutants that exhibit aberrant or defective mitosis at the restrictive temperature have been isolated. Among them, there is a class of temperature-sensitive (TS) mutants, the cut [c ell u ntimely t orn (![]()
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Recently the cut9 + gene product was found to be one of the key proteins for the transition from metaphase to anaphase during mitosis (![]()
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In this work, to investigate the function of the fission yeast rad21+ gene, we isolated a temperature-sensitive mutant of the gene. This mutant was defective in chromosome segregation because it exhibits the cut-like phenotype at the restrictive temperature, and it is sensitive to DNA-damaging agents and inhibitors of tubulin assembly and DNA replication at the permissive temperature. Also the rad21ts mutation affected growth of the strains harboring mutations in the tubulin gene nda2+ or the cut9 + gene. These results indicate that the Rad21 protein is essential for chromosome segregation and suggest that it is involved in microtubule function, DNA repair, and S-phase function via the ubiquitin-mediated proteolysis.
| MATERIALS AND METHODS |
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Yeast strains, media and genetic methods:
JY 741 (h+ ade6-M216 leu1-32 ura4-D18) was used as a wild-type strain. nda2-KM52, nda3-KM311, cut9-665, and other cut mutants were isolated previously (![]()
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Plasmids and yeast transformation procedure:
Transformation of Schizosaccharomyces pombe was performed by the lithium acetate method described by ![]()
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Isolation of the temperature-sensitive allele of rad21:
The 3.3-kb DNA fragments containing rad21+ was amplified by PCR method in the presence of 0.2 mM Mn++, which significantly reduced the fidelity of polymerization by Taq polymerase and produced mutated gene fragments (![]()
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Fluorescence microscopy:
4',6-diamidino-2-phenylindole (DAPI) staining of the cells was done as described (![]()
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FACScan Analysis:
A Becton Dickinson (San Jose, CA) FACScan was used to estimate the DNA content. Procedures for cell preparation were as follows. Cells were collected, washed with distilled water, and resuspended in 0.3 ml of distilled water. Ethanol was added to a final concentration of 70%, and cells were stored at 4° for at least 12 hrs. The cells were washed with buffer A [200 mM Tris-HCl, 20 mM EDTA (pH 7.0)], and resuspended in the same buffer. After sonication of the cell suspensions, RNase A was added to a final concentration of 0.2 mg/ml. Following a 4-hr incubation at 37°, propidium iodide (Sigma Chemical Co., St. Louis, MO) was added to a final concentration of 10 µg/ml. The resulting cell suspensions were analyzed.
| RESULTS |
|---|
Isolation of a temperature-sensitive mutant of the rad21 gene:
To isolate temperature-sensitive mutants of the rad21+ gene, we did localized mutagenesis of the gene using PCR. A mixture of randomly mutagenized rad21 DNA fragments was cloned into pUC18 plasmid and inserted by the selection marker ura4+ gene at the position just downstream of the stop codon. The constructed library was linearized by restriction digestion and then introduced into a
ura4 strain for replacement of the chromosomal rad21+ gene with the mutated one by homologous recombination (Figure 1). Among the Ura+ transformants, stable Ura+ recombinants were selected at 25°, and ts mutants, which could not grow at high temperature (36°) on a Y ES plate, were identified. One TS mutant (rad21-K1) was isolated among 21 stable Ura+ recombinants. It was confirmed by Southern blotting that the chromosomal rad21+ gene has been replaced by the mutant one with the ura4+ gene as a single copy and that temperature sensitivity is linked to the ura4+ marker. As shown in Figure 2A, the rad21-K1 mutant continued to grow for about two rounds of cell cycle, and the cell viability was gradually decreased at 36° to about 5% after 6 hrs. The rad21-K1 is also sensitive to both UV and
-ray irradiation at 25° (Figure 2B). The rad21+ plasmid corrected both ts growth and UV and
-ray sensitivity, indicating that both phenotypes were caused by the mutation in the rad21+ gene (data not shown).
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Mitotic defect in the rad21-K1 mutant:
We studied nuclear morphology and spindle structure of the rad21-K1 mutant after shift-up to 36° (Figure 3). When the mutant was incubated at 25°, the majority of the cells exhibited an interphase cell morphology and had a single nucleus with the hemispherical chromatin region, as observed in the wild-type strain incubated at 25° or 36° (data not shown). After shift-up to 36°, however, the interphase cells gradually decreased, and cells with abnormal chromosome structures appeared. Some cells had condensed chromosomes and short spindles, reminiscent of cells arrested at metaphase. Other cells had aberrant early or midanaphase chromosomes. Among this type of cells, there were cells that contained the fibrous chromosomes stretched by an elongating mitotic spindle, and cells with the chromosomes scattered along the cell axis. The scattered chromosomes often formed three blocks of nuclear material, which may be three pairs of unsegregated sister chromatids, suggesting that the sister chromatids did not appear to be separated completely. There were also cells with unevenly segregated chromosomes, cells with the displaced nucleus, and cells showing the cut-like phenotype, suggesting that septation occurred without normal separation of chromosomes. The results indicated that most of the cells exhibited the defects of precise segregation of the chromosomes.
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We constructed a rad21 disruptant in the presence of a plasmid, Rn821, which carries the rad21+ gene in the downstream region of the Rep81 promoter, a weak nmt1 promoter (![]()
Involvement of the Rad21 protein in the microtubule function:
In many of the rad21-K1 mutant cells, a mitotic spindle was not fully elongated at the restrictive temperature; therefore, we supposed that the mutant might be defective in the microtubule function. First, we examined sensitivity to an antimicrotubule agent, thiabendazole (TBZ). As shown in Figure 4A, the rad21-K1 mutant was more sensitive to TBZ at 25° than the isogenic rad21+ strain at a concentration of 10 µg, although the sensitivity was not so severe as that of the
-tubulin mutant nda2 (data not shown).
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Next, to study the genetic interaction between rad21 and mutations in tubulin genes [nda2
1-tubulin mutant (![]()
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With regard to the nda2+ gene, we failed to construct the rad21 nda2 double mutant by crossing the rad21-K1 and the nda2-KM52 single mutants at 30°. But the double mutant was obtained on a thiamine-free plate at 30° in the presence of the rad21+ plasmid, Rn821, which we described earlier. The growth of the rad21-K1 nda2-KM52 double mutant was severely inhibited on the thiamine-containing plates, on which the expression of the rad21+ gene was repressed at both 28° and 30°, but not on thiamine-free plates, although the control strains carrying the same plasmid, the rad21+ nda2+ strain and either of the single mutants, grew normally (Figure 4C). These results strongly suggested that the rad21-K1 nda2-KM52 double mutant was inviable. The nuclear morphology of the rad21-K1 nda2-KM52 cells was studied after the Rep81 promoter was repressed by addition of 16 µM thiamine at 28°. DAPI-staining of the rad21-K1 nda2-KM52 mutant revealed that aberrantly shaped or elongated cells frequently appeared and that many of the cells exhibited disturbed nuclear organization (data not shown). The results on the TBZ sensitivity of the rad21-K1 mutant and genetic interaction between rad21 and nda2 or nda3 mutations suggested that Rad21 is involved in microtubule function.
Hydroxyurea sensitivity of the rad21-K1 mutant:
To ex- amine a possible involvement of Rad21 in the checkpoint control of DNA replication, we examined the sensitivity of the rad21-K1 mutant to hydroxyurea (HU). As shown in Figure 5A, the mutant was found to be more sensitive to HU at the permissive temperature than the isogenic rad21+ strain. This phenotype was also complemented by the rad21+ plasmid (data not shown). We also examined the viability of the mutant after transient exposure to HU because viability of the rad3 mutant, which is defective in the replication checkpoint system (![]()
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As the rad21-K1 cells are moderately sensitive to HU, we examined the possibility that Rad21 might be involved in cell cycle progression in S phase. Asynchronous cells grown at 25° were transferred to 36°, and aliquots were collected every 1 hr and analyzed by FACScan analysis (Figure 5B a). In the wild-type cells, the DNA content remained 2C for 6 hr after shift-up. The 2C peak of the rad21-K1 cells, however, became broader after shift-up to 36°. This result indicated that the rad21-K1 cells are heterogeneous in their DNA content, and it is consistent with the observation that the rad21-K1 mutant undergoes aberrant mitosis under the restrictive temperature. In addition, because some populations contained the elongated cells characteristic of cell-division cycle delay at the restrictive temperature, apparent heterogeneity of the DNA content might be partially because of cell shape or size. DNA contents of the synchronous cells were also examined under 36° after release from G1 arrest by nitrogen starvation (Figure 5B b). In the rad21-K1 mutant, the peak of 1C content moved to 2C under the restrictive temperature as observed in the wild-type cells but, thereafter, DNA content became gradually heterogeneous as seen in the asynchronous culture. The result showed that the bulk of DNA replication takes place normally in the rad21-K1 mutant, although we cannot rule out the possibility that there is a deficiency in the completion of the replication in the rad21-K1 cells.
Genetic interaction of rad21 and cut9 mutations:
Because the rad21-K1 mutant showed the cut-like phenotype, it is possible that the function of the rad21-K1 gene product may be related to those of other cut gene products. Thus we studied the effects of the rad21 mutation in combination with other cut mutations. The cut1-206, cut3-477, cut7-446, cut8-563, and cut9-665 mutants (![]()
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Nuclear structure of the double mutant was examined after repression of expression of the rad21+ gene by addition of thiamine to the culture at 30°. There appeared aberrant mitotic cells, that is, cells with the chromosomes segregated unevenly, cells with scattered chromosomes, and cut-like cells and elongated cells with fibrous chromosomes (Figure 6B). These results indicated that the defect of the rad21 mutant was enhanced by the cut9 mutation. As described in the INTRODUCTION, because the Cut9 is a component of the 20S cyclosome (a ubiquitin ligase), the rad21+ gene product could be involved in the ubiquitin-mediated proteolysis pathway.
| DISCUSSION |
|---|
Requirement of Rad21 for chromosome segregation:
We have isolated and characterized a TS mutant of the fission yeast rad21+ gene, which exhibited aberrant mitotic morphology at the restrictive temperature. ![]()
Involvement of Rad21 in DNA repair, the S-phase function and the microtubule function:
Analyses with the rad21-K1 mutant showed its pleiotropic phenotypes. First, the rad21-K1 mutant is moderately sensitive to TBZ. TBZ is known to bind tubulin molecules and to inhibit polymerization of tubulin molecules. In fission yeast, TBZ-sensitive or resistant mutants have been isolated so far, and these were the mutants of the tubulin genes, nda2+ or nda3+ (![]()
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Secondly, the rad21-K1 mutant was sensitive to UV,
-ray irradiation, and HU. The double mutant carrying the rad21-K1 mutation and a TS mutation of the cdc17+ gene, which codes for DNA ligase, cannot grow at 30° (K. TATEBAYASHI, J. KATO and H. IKEDA, unpublished results). Radiation- or HU-sensitivity and synthetic lethality with the cdc17 mutation has also been shown in several checkpoint mutants (![]()
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ray or exposure to an antimicrotubule drug, Nocodazole, indicating that the mitotic checkpoint is defective. Furthermore, degradation of the Pds1 protein is required for metaphase-anaphase transition. The Rad21 protein may play roles in regulation of various checkpoint systems and in mitosis, as the Pds1 protein does. Recently, homologues of Aspergillus nidulans bimE gene product in Schizosaccharomyces pombe (![]()
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-ray irradiation, and HU exposure, indicating that G2 delay seems to take place in response to DNA damage or incomplete DNA synthesis in the mutant (K. TATEBAYASHI, J. KATO and H. IKEDA, unpublished results). Further characterization is needed to know the involvement of Rad21 in the checkpoint control systems.
Possible involvement of Rad21 in ubiquitin-mediated proteolysis pathway:
The cut9 rad21 double mutant is defective in mitosis and did not grow at 30°. Cut9 is a component of the 20S cyclosome (![]()
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sds23 strain, which is defective in the progression of anaphase (![]()
In budding yeast, the APC-mediated degradation of the Ase1 protein, a microtubule-binding protein, appears to be required for prompt disassembly of the mitotic spindle at the end of mitosis (![]()
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| ACKNOWLEDGMENTS |
|---|
We thank M. YANAGIDA and T. TAKEDA for plasmids and strains. We are also grateful to T. MIYAKE for helpful advice with FACScan analysis and to S. J. HEO for critical reading of the manuscript. This work was supported by a grant from the Ministry of Education, Science and Culture of Japan.
Manuscript received April 14, 1997; Accepted for publication September 22, 1997.
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S. Yokobayashi, M. Yamamoto, and Y. Watanabe Cohesins Determine the Attachment Manner of Kinetochores to Spindle Microtubules at Meiosis I in Fission Yeast Mol. Cell. Biol., June 1, 2003; 23(11): 3965 - 3973. [Abstract] [Full Text] [PDF] |
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Y. Mito, A. Sugimoto, and M. Yamamoto Distinct Developmental Function of Two Caenorhabditis elegans Homologs of the Cohesin Subunit Scc1/Rad21 Mol. Biol. Cell, June 1, 2003; 14(6): 2399 - 2409. [Abstract] [Full Text] [PDF] |
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Md. T. Hoque and F. Ishikawa Cohesin Defects Lead to Premature Sister Chromatid Separation, Kinetochore Dysfunction, and Spindle-assembly Checkpoint Activation J. Biol. Chem., October 25, 2002; 277(44): 42306 - 42314. [Abstract] [Full Text] [PDF] |
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D. R. Williams and J. R. McIntosh mcl1+, the Schizosaccharomyces pombe Homologue of CTF4, Is Important for Chromosome Replication, Cohesion, and Segregation Eukaryot. Cell, October 1, 2002; 1(5): 758 - 773. [Abstract] [Full Text] [PDF] |
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T. Morishita, Y. Tsutsui, H. Iwasaki, and H. Shinagawa The Schizosaccharomyces pombe rad60 Gene Is Essential for Repairing Double-Strand DNA Breaks Spontaneously Occurring during Replication and Induced by DNA-Damaging Agents Mol. Cell. Biol., May 15, 2002; 22(10): 3537 - 3548. [Abstract] [Full Text] [PDF] |
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