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A Genetically Marked I Element in Drosophila melanogaster Can Be Mobilized When ORF2 Is Provided in trans
Isabelle Busseaua, Sophie Malinskya, Maria Balakireva1,a, Marie-Christine Chaboissiera, Danielle Teningesa, and Alain Buchetonaa Centre de Génétique Moléculaire, CNRS, 91198 Gif-sur-Yvette, France
Corresponding author: Isabelle Busseau, Centre de Génétique Moléculaire, 91198 Gif-sur-Y vette cedex, France, busseau{at}cgm.cnrs-gif.fr (E-mail).
Communicating editor: M. J. SIMMONS
| ABSTRACT |
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I factors in Drosophila melanogaster are non-LTR retrotransposons similar to mammalian LINEs. They transpose at very high frequencies in the germ line of SF females resulting from crosses between reactive females, devoid of active I factors, and inducer males, containing active I factors. The vermilion marked IviP2 element was designed to allow easy phenotypical screening for retrotransposition events. It is deleted in ORF2 and therefore cannot produce reverse transcriptase. IviP2 can be mobilized at very low frequencies by actively transposing I factors in the germ line of SF females. This paper shows that IviP2 can be mobilized more efficiently in the germ line of strongly reactive females in the absence of active I factors, when it is trans-complemented by the product of ORF2 synthesized from the hsp70 heat-shock promoter. This represents a promising step toward the use of marked I elements to study retrotransposition and as tools for mutagenesis.
NON-LTR retrotransposons or LINEs are widespread in eukaryotes (![]()
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The I factor in Drosophila melanogaster is a non-LTR retrotransposon of particular interest because conditions that allow its transposition at high frequencies are provided by I-R (Inducer-Reactive) hybrid dysgenesis (![]()
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The I factor possesses all features typical of non-LTR retrotransposons. It transposes by reverse transcription of an RNA intermediate (![]()
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| MATERIALS AND METHODS |
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Fly stocks:
All strains used in the experiments are M in the PM system of hybrid dysgenesis (see ![]()
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7.51R is a transgenic line, homozygous for an X chromosome containing the IviP2 element, that derives from the weak reactive O/O strain carrying v and ry506 mutations (![]()
Plasmid constructions and transgenic lines:
All cloned sequences from the I factor derive from pI407 (![]()
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P element based transformations were essentially as described by ![]()

23 (Flybase ID: FBmc0002087) was co-injected as the source of transposase. Transformation recipient strains were wK for phsORF2HN and JA for phsORF2HR. Three independent homozygous transgenic lines were established for each construct (Figure 1) by selecting dark orange-eyed flies, and chromosome localizations of the transgenes were determined using balancer stocks. The v ; Cy/Bl; ry 506 balancer stock was used to introduce hsORF2HR and hsORF2HN from transgenic lines HR136 and HN27, respectively, into a v; ry 506 background.
Crosses:
All crosses were performed on standard fly medium (![]()
Inverse PCR and sequencing:
Inverse PCR on Nde II-cut DNA extracted from single flies was performed as described by ![]()
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S-400 HR Columns (Pharmacia, Piscataway, NJ) and sequenced with the OmniBase
DNA Cycle Sequencing System (Promega, Madison, WI) using primer RI80 (5'GTAAGCCCCGTAGCTAATGCTATAC3').
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| RESULTS |
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The low frequency of transposition of the IviP2 element observed in the germline of SF females (![]()
To exclude position effects, three independent transgenic lines were established for each construct (Figure 1) and used in the experiments described below. Only one line transgenic for IviP2 was used because previous work showed that, in SF females, mobilization of the IviP2 element from different independent transgenic lines occurred at similar rates (![]()
Genetic screens were done in a v;ry mutant background. Therefore, flies carrying the IviP2 donor element are [v; ry+], because this element is associated with the wild-type rosy gene that was used as the transformation marker and with an inactive vermilion gene, disrupted by the P intron (Figure 1). Flies carrying a transposed copy of IviP2, in which the intron was spliced out, are [v+; ry+] if they contain also the donor IviP2 element, and [v+ry] if they do not.
IviP2 can be complemented by the product of ORF2 under heat-shock control:
The general scheme of crosses is depicted in Figure 2A. Females from the 7.51R stock, homozygous for IviP2 on the X chromosome, were crossed with males from HR or HN stocks, homozygous for hsORF2HR or hsORF2HN, respectively, on autosomes. In G1, [v] males carrying both IviP2 and hsORF2 transgenes were recovered. In the standard experiments, these males were crossed with females from the strongly reactive [v;ry] misy strain, and the resulting G2 females were submitted to heat-shock treatments and mated with their brothers. Trans-complementation of IviP2 might occur in the germ line of half of these females, which receive both the IviP2 and hsORF2 transgenes. Retrotransposition events should result in the occurrence of [v+] progeny in G3.
The results are shown in Table 1. In the first set of experiments (P1, S12, T3, M12), three independent HR lines were used. In all cases [v+] flies were recovered at low frequencies, ranging from 0.6 to 1.8 x 10-3. In experiment T1, in which the heat shock treatments were omitted, no [v+] fly was found among more than 9000 flies observed, suggesting that trans-complementation of IviP2 observed in the other experiments requires heat induction of the synthesis of the product of ORF2. Experiments M35 were done using three independent HN lines. [v+] flies were again recovered at low frequencies ranging from 1.8 to 2.8 x 10-3. Interestingly, these frequencies seem to be constantly somewhat higher (roughly twofold) than those obtained when using HR (compare M35 with M12). However, sample sizes are too small to allow statistical analysis. Experiments S3 and S4 were done using G1 females from another strongly reactive strain, y v, instead of misy. In this case the frequency of transposition of IviP2 was found to be around 0.5 x 10-3, which is about two- to threefold lower than when the misy strain was used (compare S3 with S1, S4 with S2). No obvious correlation can be made with the reactivity level which was roughly the same in both strains y v and misy.
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Altogether, these results show that transposition of IviP2 can occur in the absence of transposing I factors when the product of ORF2 is available for trans-complementation, and, in these conditions (after heat-shock induction), is more efficient than in SF females where the frequency of transposition of IviP2 was around 3 x 10-4 (![]()
Toward an efficient system of transposition of the marked IviP2 element:
To improve the efficiency of transposition of IviP2, the two-generation scheme of crosses shown in Figure 2B was designed. In this scheme, females homozygous for IviP2 are mated with males from HR or HN stocks, homozygous for an autosomal insertion of hsORF2 in a v;ry background. Transposition is expected to occur in the germ-line of G1 females, which contain both IviP2 and hsORF2. These females are submitted to heat-shock treatments and mated with their brothers. In this case, the frequency of transposition is equal to the frequency of [v+] flies recovered in the next generation (G2).
This scheme of crosses requires that strongly reactive females are used in G0 to ensure efficient transcription of IviP2 in the germ line of G1 females. The 7.51R transgenic line containing the IviP2 element was derived from the weakly reactive O/O strain (![]()
The results are shown in Table 2. A transposition frequency of 1.9 x 10-3 was found in experiment M7 using HR136. Sample sizes are too small to allow statistical analysis, but this result does not seem significantly different from that obtained in experiment P1 (1.8 x 10-3, Table 1). Results were better when HN27 was used: transposition frequencies obtained in experiments M62 and M63 were found to be 6.7 x 10-3 and 5.0 x 10-3, respectively. Some transposition events occurred, at a tenfold lower level, in experiment M64 in which heat-shock treatments were omitted, reflecting a low level of basal activity of the hsp70 promoter.
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The efficiency of transposition of IviP2 is affected by the reactivity level:
As mentioned earlier, the frequency of I factor transposition in the germ line of SF females is modulated by the reactivity level (![]()
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Experiment N1 was designed to definitively address the issue of whether the reactivity level influences the frequency of transposition of IviP2. This experiment was done in the same way as experiment M7, except that it was started from the reciprocal cross in G0: females from the v; HR133; ry stock were mated to males from the 7.51RF#6 subline. The reactivity level of the v; HR133; ry stock was rather weak because the hatchability of eggs laid by SF females produced by crossing females from this stock by males from the w1118 inducer strain was 32%. Thus, G1 females obtained in both experiments M7 and N1 differ only by their maternally inherited components: they have exactly the same genotype and, therefore, produce the same amount of reverse transcriptase for trans-complementation. 10457 G2 flies were observed in experiment N1, among which only one was [v+]: this represents a frequency of transposition of 0.1 x 10-3, which is 20-fold lower than the frequency observed in experiment M7. Therefore, as expected, IviP2 is mobilized more efficiently in a strongly reactive background than in a weakly reactive background.
Analysis of transposition events:
A total of 102 [v+] flies were recovered in these experiments, 10 of which died before any further analysis. To detect at the molecular level the presence of a spliced copy of IviP2, about half of these flies were submitted to PCR analysis as described previously (![]()
Some of the recovered flies were [v+; ry] and therefore did not contain the parental IviP2 donor element: this excludes the possibility that splicing of the intron would be an artifact that occurred at the DNA level on the parental IviP2 element. The flies that were [v+; ry+] were backcrossed to flies from the misy strain in order to check that [v+; ry] flies could be recovered in the next generation, indicating that the spliced copy can be separated from the parental IviP2 donor element. In only two cases was it impossible to separate the [v+] and [ry+] phenotypes, both determinants being localized on the X chromosome: in these two cases, the transposed copy of IviP2 probably inserted very close to the parental IviP2 element, but the possibility that the [v+] phenotype could be the result of an event other than retrotransposition cannot be excluded.
Most of the [v+] flies recovered in this work were found independently, but some of them appeared in clusters of two or three in the progeny of the same parents. The experiments described below were conducted to study the 3' ends and 3' flanking sequences of the transposed copies of IviP2, and to determine whether the ones that appeared in clusters result from a single retrotransposition event or not. Inverse PCR experiments were performed on ligated NdeII-cut DNA from 72 single [v+] flies using pairs of backward-oriented primers within the vermilion and the I factor sequences as shown in Figure 3. Amplification reactions were designed with an elongation time of 45 seconds, therefore, limiting the size of amplified fragments to around 11.5 kb. A single fragment of variable size (from 200 bp to 1.5 kb, depending on the couple of primers used) was amplified in 61 out of 72 cases. No amplification was detected in the 11 remaining cases, probably due to distance of the nearest NdeII site flanking the element. Sequences at the 3' ends of some of the transposed copies of IviP2 are shown in Figure 4. As expected, transposed copies terminate at their 3' ends by a variable number of TAA repeats: the same number (five) as the donor element, or either less (four) or more (six to eight). Flanking sequences at the 3' ends of the TAA repeats are all different from one another as well as from sequences that lie at the 3' end of the donor IviP2 element. This means that all transposed copies for which sequence information was available have inserted independently, even though some of them (for example, M3-12a and b, M4-10a and b, M7-7a and b) were recovered from the same parents. This corroborates previous observations suggesting that transposition of I elements is not a premeiotic event (![]()
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| DISCUSSION |
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Use of the hsp70 promoter to drive ORF2 expression:
The IviP2 element is likely to behave as an active I factor regarding RNA synthesis from the internal promoter of the I factor and production of the protein encoded by ORF1, but it cannot produce the protein normally encoded by ORF2. Therefore, this protein has to be provided in trans at the right place and the right time to allow retrotransposition of the IviP2 element to occur. In the experiments described here, the hsp70 promoter was used to drive ORF2 expression. This promoter is heat-inducible in nurse cells from early stages to stage 9 of oogenesis (![]()
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Trans-complementation of IviP2 is more efficient with hsORF2HN than it is with hsORF2HR. This might appear surprising if one assumes that the reverse transcriptase recognizes some specific sequences at the 3' end of the I factor RNA: then one would expect that the 3' end of I present in hsORF2HN RNAs would compete with the 3' end of I present in IviP2 RNAs. However, such cis-required sequences have not been identified so far. Possibly, the difference between hsORF2HN and hsORF2HR could be a result of RNA stability. hsp70 termination sequences are known to activate rapid RNA degradation after heat-shock (![]()
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Use of marked I elements to study retrotransposition:
The use of marked I elements is crucial to study most aspects of the retrotransposition process. Several marked elements have been described in the past (![]()
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Even in the best experimental conditions presented here, transposition of IviP2 still occurs at low frequencies compared to transposition of autonomous wild- type I factors. This is consistent with the cis-mechanism of LINE retrotransposition recently proposed by ![]()
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Use of marked I elements for mutagenesis:
The use of transposable elements as mutagens is useful because it provides an easy way to clone the mutated gene. In Drosophila melanogaster, P element mutagenesis has become a routine technique of invaluable help in developmental studies. A limitation of the use of P elements is that presumably one third of Drosophila genes cannot be mutated this way (![]()
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| FOOTNOTES |
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1 Present address: Neurobiologie de l'Apprentissage et de la Mémoire, Université Paris XI, 91405 Orsay, France ![]()
| ACKNOWLEDGMENTS |
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We thank ALAIN PÉLISSON for sharing his good ideas with us throughout this work and for critical reading of the manuscript, STÉPHANE OBERLANDER for invaluable help in experiments S14, and ERIC PETROCHILO for advice in PCR sequencing. This work was supported by grants from the Centre National de la Recherche Scientifique (UPR A9061), the Association pour la Recherche sur le Cancer (ARC contract 1132) and the Action Coordonnées Concertées des Sciences du Vivant (ACCSV1).
Manuscript received July 6, 1997; Accepted for publication September 19, 1997.
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M.-d.-C. Seleme, I. Busseau, S. Malinsky, A. Bucheton, and D. Teninges High-Frequency Retrotransposition of a Marked I Factor in Drosophila melanogaster Correlates With a Dynamic Expression Pattern of the ORF1 Protein in the Cytoplasm of Oocytes Genetics, February 1, 1999; 151(2): 761 - 771. [Abstract] [Full Text] |
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