help button home button Genetics J Nutrition
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Originally published as Genetics Published Articles Ahead of Print on December 15, 2005.

Genetics, Vol. 172, 1867-1876, March 2006, Copyright © 2006
doi:10.1534/genetics.105.050617

This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Supplemental Data
Right arrow All Versions of this Article:
genetics.105.050617v1
172/3/1867    most recent
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by El-Lithy, M. E.
Right arrow Articles by Koornneef, M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by El-Lithy, M. E.
Right arrow Articles by Koornneef, M.

New Arabidopsis Recombinant Inbred Line Populations Genotyped Using SNPWave and Their Use for Mapping Flowering-Time Quantitative Trait Loci

Mohamed E. El-Lithy*,{dagger},1, Leónie Bentsink*,1, Corrie J. Hanhart*, Gerda J. Ruys*, Daniela Rovito*, José L. M. Broekhof{ddagger}, Hein J. A. van der Poel{ddagger}, Michiel J. T. van Eijk{ddagger}, Dick Vreugdenhil{dagger} and Maarten Koornneef*,§,2

* Laboratory of Genetics, Wageningen University, 6703 BD Wageningen, The Netherlands, {dagger} Laboratory of Plant Physiology, Wageningen University, 6703 BD Wageningen, The Netherlands, {ddagger} Keygene N. V., 6700 AE Wageningen, The Netherlands and § Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10 50829, Cologne, Germany

2 Corresponding author: Wageningen University, Laboratory of Genetics, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands.
E-mail: maarten.koornneef{at}wur.nl

The SNPWave marker system, based on SNPs between the reference accessions Colombia-0 and Landsberg erecta (Ler), was used to distinguish a set of 92 Arabidopsis accessions from various parts of the world. In addition, we used these markers to genotype three new recombinant inbred line populations for Arabidopsis, having Ler as a common parent that was crossed with the accessions Antwerp-1, Kashmir-2, and Kondara. The benefit of using multiple populations that contain many similar markers and the fact that all markers are linked to the physical map of Arabidopsis facilitates the quantitative comparison of maps. Flowering-time variation was analyzed in the three recombinant inbred line populations. Per population, four to eight quantitative trait loci (QTL) were detected. The comparison of the QTL positions related to the physical map allowed the estimate of 12 different QTL segregating for flowering time for which Ler has an allele different from one, two, or three of the other accessions.




This article has been cited by other articles:


Home page
 GeneticsHome page
M. Simon, O. Loudet, S. Durand, A. Berard, D. Brunel, F.-X. Sennesal, M. Durand-Tardif, G. Pelletier, and C. Camilleri
Quantitative Trait Loci Mapping in Five New Large Recombinant Inbred Line Populations of Arabidopsis thaliana Genotyped With Consensus Single-Nucleotide Polymorphism Markers
Genetics, April 1, 2008; 178(4): 2253 - 2264.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
B. Kusterer, H.-P. Piepho, H. F. Utz, C. C. Schon, J. Muminovic, R. C. Meyer, T. Altmann, and A. E. Melchinger
Heterosis for Biomass-Related Traits in Arabidopsis Investigated by Quantitative Trait Loci Analysis of the Triple Testcross Design With Recombinant Inbred Lines
Genetics, November 1, 2007; 177(3): 1839 - 1850.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
E. Esch, J. M. Szymaniak, H. Yates, W. P. Pawlowski, and E. S. Buckler
Using Crossover Breakpoints in Recombinant Inbred Lines to Identify Quantitative Trait Loci Controlling the Global Recombination Frequency
Genetics, November 1, 2007; 177(3): 1851 - 1858.
[Abstract] [Full Text] [PDF]

Home page
 J Exp BotHome page
Flowering Newsletter bibliography for 2006
J. Exp. Bot., April 20, 2007; (2007) erm028v2.
[Full Text] [PDF]

Home page
 Plant Physiol.Home page
J. M. Cross, M. von Korff, T. Altmann, L. Bartzetko, R. Sulpice, Y. Gibon, N. Palacios, and M. Stitt
Variation of Enzyme Activities and Metabolite Levels in 24 Arabidopsis Accessions Growing in Carbon-Limited Conditions
Plant Physiology, December 1, 2006; 142(4): 1574 - 1588.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
L. Bentsink, J. Jowett, C. J. Hanhart, and M. Koornneef
Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis
PNAS, November 7, 2006; 103(45): 17042 - 17047.
[Abstract] [Full Text] [PDF]


HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Copyright © 2006 by the Genetics Society of America.