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Originally published as Genetics Published Articles Ahead of Print on December 15, 2005.
Genetics, Vol. 172, 1867-1876, March 2006, Copyright © 2006
doi:10.1534/genetics.105.050617
New Arabidopsis Recombinant Inbred Line Populations Genotyped Using SNPWave and Their Use for Mapping Flowering-Time Quantitative Trait Loci
Mohamed E. El-Lithy*,
,1,
Leónie Bentsink*,1,
Corrie J. Hanhart*,
Gerda J. Ruys*,
Daniela Rovito*,
José L. M. Broekhof
,
Hein J. A. van der Poel,
Michiel J. T. van Eijk,
Dick Vreugdenhil and
Maarten Koornneef*,
,2
* Laboratory of Genetics, Wageningen University, 6703 BD Wageningen, The Netherlands, Laboratory of Plant Physiology, Wageningen University, 6703 BD Wageningen, The Netherlands, Keygene N. V., 6700 AE Wageningen, The Netherlands and Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10 50829, Cologne, Germany
2 Corresponding author: Wageningen University, Laboratory of Genetics, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands.
E-mail: maarten.koornneef{at}wur.nl
The SNPWave marker system, based on SNPs between the reference accessions Colombia-0 and Landsberg erecta (Ler), was used to distinguish a set of 92 Arabidopsis accessions from various parts of the world. In addition, we used these markers to genotype three new recombinant inbred line populations for Arabidopsis, having Ler as a common parent that was crossed with the accessions Antwerp-1, Kashmir-2, and Kondara. The benefit of using multiple populations that contain many similar markers and the fact that all markers are linked to the physical map of Arabidopsis facilitates the quantitative comparison of maps. Flowering-time variation was analyzed in the three recombinant inbred line populations. Per population, four to eight quantitative trait loci (QTL) were detected. The comparison of the QTL positions related to the physical map allowed the estimate of 12 different QTL segregating for flowering time for which Ler has an allele different from one, two, or three of the other accessions.
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