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Genetics, Vol. 168, 1575-1584, November 2004, Copyright © 2004
doi:10.1534/genetics.103.022343

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Comparing the Linkage Maps of the Close Relatives Arabidopsis lyrata and A. thaliana

Helmi Kuittinen*,1, Anita A. de Haan*,2, Claus Vogl{dagger}, Sami Oikarinen*,3, Johanna Leppälä*, Marcus Koch{ddagger},4, Tom Mitchell-Olds{ddagger}, Charles H. Langley§ and Outi Savolainen*

* Department of Biology, University of Oulu, 90401 Oulu, Finland
{dagger} Institute of Animal Husbandry and Genetics, Veterinary Medicine, University of Wien, A-1210 Wien, Austria
{ddagger} Department of Genetics and Evolution, Max-Planck Institute of Chemical Ecology, 07745 Jena, Germany
§ Center for Population Biology, University of California, Davis, California 95616

1 Corresponding author: Department of Biology, P.O. Box 3000, University of Oulu, 90401 Oulu, Finland.
E-mail: helmi.kuittinen{at}oulu.fi

We have constructed a genetic map of Arabidopsis lyrata, a self-incompatible relative of the plant model species A. thaliana. A. lyrata is a diploid (n = 8) species that diverged from A. thaliana (n = 5) ~5 MYA. Mapping was conducted in a full-sib progeny of two unrelated F1 hybrids between two European populations of A. lyrata ssp. petraea. We used the least-squares method of the Joinmap program for map construction. The gross chromosomal differences between the two species were most parsimoniously explained with three fusions, two reciprocal translocations, and one inversion. The total map length was 515 cM, and the distances were 12% larger than those between corresponding markers in the linkage map of A. thaliana. The 72 markers, consisting of microsatellites and gene-based markers, were spaced on average every 8 cM. Transmission ratio distortion was extensive, and most distortions were specific to each reciprocal cross, suggesting cytoplasmic interactions. We estimate locations and most probable genotype frequencies of transmission ratio distorting loci (TRDL) with a Bayesian method and discuss the possible reasons for the observed distortions.




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