Genetics, Vol. 165, 849-865, October 2003, Copyright © 2003

High-Resolution Crossover Maps for Each Bivalent of Zea mays Using Recombination Nodules

Lorinda K. Andersona, Gregory G. Doyleb, Brian Brighama, Jenna Cartera, Kristina D. Hookera, Ann Laia, Mindy Ricea, and Stephen M. Stacka
a Department of Biology, Colorado State University, Fort Collins, Colorado 80523
b Department of Agronomy, University of Missouri, Columbia, Missouri 65211

Corresponding author: Lorinda K. Anderson, Colorado State University, Fort Collins, CO 80523., lorinda.anderson{at}colostate.edu (E-mail)

Communicating editor: R. S. HAWLEY

Recombination nodules (RNs) are closely correlated with crossing over, and, because they are observed by electron microscopy of synaptonemal complexes (SCs) in extended pachytene chromosomes, RNs provide the highest-resolution cytological marker currently available for defining the frequency and distribution of crossovers along the length of chromosomes. Using the maize inbred line KYS, we prepared an SC karyotype in which each SC was identified by relative length and arm ratio and related to the proper linkage group using inversion heterozygotes. We mapped 4267 RNs on 2080 identified SCs to produce high-resolution maps of RN frequency and distribution on each bivalent. RN frequencies are closely correlated with both chiasma frequencies and SC length. The total length of the RN recombination map is about twofold shorter than that of most maize linkage maps, but there is good correspondence between the relative lengths of the different maps when individual bivalents are considered. Each bivalent has a unique distribution of crossing over, but all bivalents share a high frequency of distal RNs and a severe reduction of RNs at and near kinetochores. The frequency of RNs at knobs is either similar to or higher than the average frequency of RNs along the SCs. These RN maps represent an independent measure of crossing over along maize bivalents.





This article has been cited by other articles:


Home page
GeneticsHome page
A. Kawabe, A. Forrest, S. I. Wright, and D. Charlesworth
High DNA Sequence Diversity in Pericentromeric Genes of the Plant Arabidopsis lyrata
Genetics, June 1, 2008; 179(2): 985 - 995.
[Abstract] [Full Text] [PDF]


Home page
J HeredHome page
A.-C. Thuillet, M. I. Tenaillon, L. K. Anderson, S. E. Mitchell, S. Kresovich, S. M. Stack, B. Gaut, and J. Doebley
A Weak Effect of Background Selection on Trinucleotide Microsatellites in Maize
J. Hered., January 1, 2008; 99(1): 45 - 55.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
E. Esch, J. M. Szymaniak, H. Yates, W. P. Pawlowski, and E. S. Buckler
Using Crossover Breakpoints in Recombinant Inbred Lines to Identify Quantitative Trait Loci Controlling the Global Recombination Frequency
Genetics, November 1, 2007; 177(3): 1851 - 1858.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
F. I. E. Amarillo and H. W. Bass
A Transgenomic Cytogenetic Sorghum (Sorghum propinquum) Bacterial Artificial Chromosome Fluorescence in Situ Hybridization Map of Maize (Zea mays L.) Pachytene Chromosome 9, Evidence for Regions of Genome Hyperexpansion
Genetics, November 1, 2007; 177(3): 1509 - 1526.
[Abstract] [Full Text] [PDF]


Home page
Crop Sci.Home page
K. Fengler, S. M. Allen, B. Li, and A. Rafalski
Distribution of Genes, Recombination, and Repetitive Elements in the Maize Genome
Crop Sci., July 16, 2007; 47(S2): S-83 - S-95.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
J. C. Lamb, T. Danilova, M. J. Bauer, J. M. Meyer, J. J. Holland, M. D. Jensen, and J. A. Birchler
Single-Gene Detection and Karyotyping Using Small-Target Fluorescence in Situ Hybridization on Maize Somatic Chromosomes
Genetics, March 1, 2007; 175(3): 1047 - 1058.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C. J. Lawrence, M. L. Schaeffer, T. E. Seigfried, D. A. Campbell, and L. C. Harper
MaizeGDB's new data types, resources and activities
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D895 - D900.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
Y. Fu, T.-J. Wen, Y. I. Ronin, H. D. Chen, L. Guo, D. I. Mester, Y. Yang, M. Lee, A. B. Korol, D. A. Ashlock, et al.
Genetic Dissection of Intermated Recombinant Inbred Lines Using a New Genetic Map of Maize
Genetics, November 1, 2006; 174(3): 1671 - 1683.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
J. Shi and R. K. Dawe
Partitioning of the Maize Epigenome by the Number of Methyl Groups on Histone H3 Lysines 9 and 27
Genetics, July 1, 2006; 173(3): 1571 - 1583.
[Abstract] [Full Text] [PDF]


Home page
Plant CellHome page
C.-J. R. Wang, L. Harper, and W. Z. Cande
High-Resolution Single-Copy Gene Fluorescence in Situ Hybridization and Its Use in the Construction of a Cytogenetic Map of Maize Chromosome 9
PLANT CELL, March 1, 2006; 18(3): 529 - 544.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
C. J. Lawrence, T. E. Seigfried, H. W. Bass, and L. K. Anderson
Predicting Chromosomal Locations of Genetically Mapped Loci in Maize Using the Morgan2McClintock Translator
Genetics, March 1, 2006; 172(3): 2007 - 2009.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
L. K. Anderson, A. Lai, S. M. Stack, C. Rizzon, and B. S. Gaut
Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes
Genome Res., January 1, 2006; 16(1): 115 - 122.
[Abstract] [Full Text] [PDF]


Home page
Plant CellHome page
H. Yan, W. Jin, K. Nagaki, S. Tian, S. Ouyang, C. R. Buell, P. B. Talbert, S. Henikoff, and J. Jiang
Transcription and Histone Modifications in the Recombination-Free Region Spanning a Rice Centromere
PLANT CELL, December 1, 2005; 17(12): 3227 - 3238.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
S. L. Page and R. S. Hawley
The Drosophila Meiotic Mutant mei-352 Is an Allele of klp3A and Reveals a Role for a Kinesin-like Protein in Crossover Distribution
Genetics, August 1, 2005; 170(4): 1797 - 1807.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
J.-S. Kim, P. E. Klein, R. R. Klein, H. J. Price, J. E. Mullet, and D. M. Stelly
Chromosome Identification and Nomenclature of Sorghum bicolor
Genetics, February 1, 2005; 169(2): 1169 - 1173.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
L. K. Anderson, N. Salameh, H. W. Bass, L. C. Harper, W. Z. Cande, G. Weber, and S. M. Stack
Integrating Genetic Linkage Maps With Pachytene Chromosome Structure in Maize
Genetics, April 1, 2004; 166(4): 1923 - 1933.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
K. E. Koehler, E. A. Millie, J. P. Cherry, S. E. Schrump, and T. J. Hassold
Meiotic Exchange and Segregation in Female Mice Heterozygous for Paracentric Inversions
Genetics, March 1, 2004; 166(3): 1199 - 1214.
[Abstract] [Full Text] [PDF]