help button home button Genetics Please Sign the Guestbook
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Davis, G. L.
Right arrow Articles by Coe, E. H.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Davis, G. L.
Right arrow Articles by Coe, E. H., , Jr.
Genetics, Vol. 152, 1137-1172, July 1999, Copyright © 1999

A Maize Map Standard With Sequenced Core Markers, Grass Genome Reference Points and 932 Expressed Sequence Tagged Sites (ESTs) in a 1736-Locus Map

G. L. Davisa, M. D. McMullena, C. Baysdorferb, T. Musketc, D. Grantd, M. Staebelld, G. Xua, M. Polaccoa, L. Kosterd, S. Melia-Hancockc, K. Houchinsa, S. Chaoc, and E. H. Coe, Jr.a
a USDA-ARS, Midwest Area, Plant Genetics Research Unit, Columbia, Missouri 65211,
b Department of Biological Sciences, California State University, Hayward, California 94542,
c Department of Agronomy, University of Missouri, Columbia, Missouri 65211
d Pioneer Hi-Bred International Inc., Johnston, Iowa 50131

Corresponding author: E. H. Coe, Jr., USDA-ARS, MWA, PGRU, 210 Curtis Hall, Columbia, MO 65211., ed{at}teosinte.agron.missouri.edu (E-mail)

Communicating editor: W. F. SHERIDAN

We have constructed a 1736-locus maize genome map containing1156 loci probed by cDNAs, 545 probed by random genomic clones, 16 by simple sequence repeats (SSRs), 14 by isozymes, and 5 by anonymous clones. Sequence information is available for 56% of the loci with 66% of the sequenced loci assigned functions. A total of 596 new ESTs were mapped from a B73 library of 5-wk-old shoots. The map contains 237 loci probed by barley, oat, wheat, rice, or tripsacum clones, which serve as grass genome reference points in comparisons between maize and other grass maps. Ninety core markers selected for low copy number, high polymorphism, and even spacing along the chromosome delineate the 100 bins on the map. The average bin size is 17 cM. Use of bin assignments enables comparison among different maize mapping populations and experiments including those involving cytogenetic stocks, mutants, or quantitative trait loci. Integration of nonmaize markers in the map extends the resources available for gene discovery beyond the boundaries of maize mapping information into the expanse of map, sequence, and phenotype information from other grass species. This map provides a foundation for numerous basic and applied investigations including studies of gene organization, gene and genome evolution, targeted cloning, and dissection of complex traits.




This article has been cited by other articles:


Home page
 GeneticsHome page
F. I. E. Amarillo and H. W. Bass
A Transgenomic Cytogenetic Sorghum (Sorghum propinquum) Bacterial Artificial Chromosome Fluorescence in Situ Hybridization Map of Maize (Zea mays L.) Pachytene Chromosome 9, Evidence for Regions of Genome Hyperexpansion
Genetics, November 1, 2007; 177(3): 1509 - 1526.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
S.-B. Chang, L. K. Anderson, J. D. Sherman, S. M. Royer, and S. M. Stack
Predicting and Testing Physical Locations of Genetically Mapped Loci on Tomato Pachytene Chromosome 1
Genetics, August 1, 2007; 176(4): 2131 - 2138.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
T. Nakazato, M.-K. Jung, E. A. Housworth, L. H. Rieseberg, and G. J. Gastony
Genetic Map-Based Analysis of Genome Structure in the Homosporous Fern Ceratopteris richardii
Genetics, July 1, 2006; 173(3): 1585 - 1597.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
L. A. Robertson-Hoyt, M. P. Jines, P. J. Balint-Kurti, C. E. Kleinschmidt, D. G. White, G. A. Payne, C. M. Maragos, T. L. Molnar, and J. B. Holland
QTL Mapping for Fusarium Ear Rot and Fumonisin Contamination Resistance in Two Maize Populations
Crop Sci., June 20, 2006; 46(4): 1734 - 1743.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
C.-J. R. Wang, L. Harper, and W. Z. Cande
High-Resolution Single-Copy Gene Fluorescence in Situ Hybridization and Its Use in the Construction of a Cytogenetic Map of Maize Chromosome 9
PLANT CELL, March 1, 2006; 18(3): 529 - 544.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
C. J. Lawrence, T. E. Seigfried, H. W. Bass, and L. K. Anderson
Predicting Chromosomal Locations of Genetically Mapped Loci in Maize Using the Morgan2McClintock Translator
Genetics, March 1, 2006; 172(3): 2007 - 2009.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
L. K. Anderson, A. Lai, S. M. Stack, C. Rizzon, and B. S. Gaut
Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes
Genome Res., January 1, 2006; 16(1): 115 - 122.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
I. Vroh Bi, M. D. McMullen, H. Sanchez-Villeda, S. Schroeder, J. Gardiner, M. Polacco, C. Soderlund, R. Wing, Z. Fang, and E. H. Coe Jr.
Single Nucleotide Polymorphisms and Insertion-Deletions for Genetic Markers and Anchoring the Maize Fingerprint Contig Physical Map
Crop Sci., December 2, 2005; 46(1): 12 - 21.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
M. Falque, L. Decousset, D. Dervins, A.-M. Jacob, J. Joets, J.-P. Martinant, X. Raffoux, N. Ribiere, C. Ridel, D. Samson, et al.
Linkage Mapping of 1454 New Maize Candidate Gene Loci
Genetics, August 1, 2005; 170(4): 1957 - 1966.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
J. Ma, P. SanMiguel, J. Lai, J. Messing, and J. L. Bennetzen
DNA Rearrangement in Orthologous Orp Regions of the Maize, Rice and Sorghum Genomes
Genetics, July 1, 2005; 170(3): 1209 - 1220.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
L. L. Qi, B. Echalier, S. Chao, G. R. Lazo, G. E. Butler, O. D. Anderson, E. D. Akhunov, J. Dvorak, A. M. Linkiewicz, A. Ratnasiri, et al.
A Chromosome Bin Map of 16,000 Expressed Sequence Tag Loci and Distribution of Genes Among the Three Genomes of Polyploid Wheat
Genetics, October 1, 2004; 168(2): 701 - 712.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
K. V. Krutovsky, M. Troggio, G. R. Brown, K. D. Jermstad, and D. B. Neale
Comparative Mapping in the Pinaceae
Genetics, September 1, 2004; 168(1): 447 - 461.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
M. I. Tenaillon, J. U'Ren, O. Tenaillon, and B. S. Gaut
Selection Versus Demography: A Multilocus Investigation of the Domestication Process in Maize
Mol. Biol. Evol., July 1, 2004; 21(7): 1214 - 1225.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
L. K. Anderson, N. Salameh, H. W. Bass, L. C. Harper, W. Z. Cande, G. Weber, and S. M. Stack
Integrating Genetic Linkage Maps With Pachytene Chromosome Structure in Maize
Genetics, April 1, 2004; 166(4): 1923 - 1933.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
R. Mihaljevic, H. F. Utz, and A. E. Melchinger
Congruency of Quantitative Trait Loci Detected for Agronomic Traits in Testcrosses of Five Populations of European Maize
Crop Sci., January 1, 2004; 44(1): 114 - 124.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
H. Ma, P. H. Moore, Z. Liu, M. S. Kim, Q. Yu, M. M. M. Fitch, T. Sekioka, A. H. Paterson, and R. Ming
High-Density Linkage Mapping Revealed Suppression of Recombination at the Sex Determination Locus in Papaya
Genetics, January 1, 2004; 166(1): 419 - 436.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
C. O. Marian, S. J. Bordoli, M. Goltz, R. A. Santarella, L. P. Jackson, O. Danilevskaya, M. Beckstette, R. Meeley, and H. W. Bass
The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro
Plant Physiology, November 1, 2003; 133(3): 1336 - 1350.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
L. K. Anderson, G. G. Doyle, B. Brigham, J. Carter, K. D. Hooker, A. Lai, M. Rice, and S. M. Stack
High-Resolution Crossover Maps for Each Bivalent of Zea mays Using Recombination Nodules
Genetics, October 1, 2003; 165(2): 849 - 865.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
J. E. Bowers, C. Abbey, S. Anderson, C. Chang, X. Draye, A. H. Hoppe, R. Jessup, C. Lemke, J. Lennington, Z. Li, et al.
A High-Density Genetic Recombination Map of Sequence-Tagged Sites for Sorghum, as a Framework for Comparative Structural and Evolutionary Genomics of Tropical Grains and Grasses
Genetics, September 1, 2003; 165(1): 367 - 386.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
S. Hampson, A. McLysaght, B. Gaut, and P. Baldi
LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics
Genome Res., May 1, 2003; 13(5): 999 - 1010.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
S. P. Hazen, R. M. Hawley, G. L. Davis, B. Henrissat, and J. D. Walton
Quantitative Trait Loci and Comparative Genomics of Cereal Cell Wall Composition
Plant Physiology, May 1, 2003; 132(1): 263 - 271.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
Y.-S. Yim, G. L. Davis, N. A. Duru, T. A. Musket, E. W. Linton, J. W. Messing, M. D. McMullen, C. A. Soderlund, M. L. Polacco, J. M. Gardiner, et al.
Characterization of Three Maize Bacterial Artificial Chromosome Libraries toward Anchoring of the Physical Map to the Genetic Map Using High-Density Bacterial Artificial Chromosome Filter Hybridization
Plant Physiology, December 1, 2002; 130(4): 1686 - 1696.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
M. I. Tenaillon, M. C. Sawkins, L. K. Anderson, S. M. Stack, J. Doebley, and B. S. Gaut
Patterns of Diversity and Recombination Along Chromosome 1 of Maize (Zea mays ssp. mays L.)
Genetics, November 1, 2002; 162(3): 1401 - 1413.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
B. S. Bushman, M. E. Snook, J. P. Gerke, S. J. Szalma, M. A. Berhow, K. E. Houchins, and M. D. McMullen
Two Loci Exert Major Effects on Chlorogenic Acid Synthesis in Maize Silks
Crop Sci., September 1, 2002; 42(5): 1669 - 1678.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
S. J. Szalma, M. E. Snook, B. S. Bushman, K. E. Houchins, and M. D. McMullen
Duplicate Loci as QTL: The Role of Chalcone Synthase Loci in Flavone and Phenylpropanoid Biosynthesis in Maize
Crop Sci., September 1, 2002; 42(5): 1679 - 1687.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
C. A. Webb, T. E. Richter, N. C. Collins, M. Nicolas, H. N. Trick, T. Pryor, and S. H. Hulbert
Genetic and Molecular Characterization of the Maize rp3 Rust Resistance Locus
Genetics, September 1, 2002; 162(1): 381 - 394.
[Abstract] [Full Text] [PDF]

Home page
 ANN BOT (LOND)Home page
R. TUBEROSA, S. SALVI, M. C. SANGUINETI, P. LANDI, M. MACCAFERRI, and S. CONTI
Mapping QTLs Regulating Morpho-physiological Traits and Yield: Case Studies, Shortcomings and Perspectives in Drought-stressed Maize
Ann. Bot., June 15, 2002; 89(7): 941 - 963.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
R. P. Dunford, M. Yano, N. Kurata, T. Sasaki, G. Huestis, T. Rocheford, and D. A. Laurie
Comparative Mapping of the Barley Ppd-H1 Photoperiod Response Gene Region, Which Lies Close to a Junction Between Two Rice Linkage Segments
Genetics, June 1, 2002; 161(2): 825 - 834.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
J. P. Tomkins, G. Davis, D. Main, Y. Yim, N. Duru, T. Musket, J. L. Goicoechea, D. A. Frisch, E. H. Coe Jr., and R. A. Wing
Construction and Characterization of a Deep-Coverage Bacterial Artificial Chromosome Library for Maize
Crop Sci., May 1, 2002; 42(3): 928 - 933.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
C. Jampatong, M. D. McMullen, B. D. Barry, L. L. Darrah, P. F. Byrne, and H. Kross
Quantitative Trait Loci for First- and Second-Generation European Corn Borer Resistance Derived from the Maize Inbred Mo47
Crop Sci., March 1, 2002; 42(2): 584 - 593.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
W. Li and B. S. Gill
The Colinearity of the Sh2/A1 Orthologous Region in Rice, Sorghum and Maize Is Interrupted and Accompanied by Genome Expansion in the Triticeae
Genetics, March 1, 2002; 160(3): 1153 - 1162.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
H. Fu, Z. Zheng, and H. K. Dooner
Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude
PNAS, January 22, 2002; 99(2): 1082 - 1087.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
N. Lauter and J. Doebley
Genetic Variation for Phenotypically Invariant Traits Detected in Teosinte: Implications for the Evolution of Novel Forms
Genetics, January 1, 2002; 160(1): 333 - 342.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
E. Coe, K. Cone, M. McMullen, S.-S. Chen, G. Davis, J. Gardiner, E. Liscum, M. Polacco, A. Paterson, H. Sanchez-Villeda, et al.
Access to the Maize Genome: An Integrated Physical and Genetic Map
Plant Physiology, January 1, 2002; 128(1): 9 - 12.
[Full Text] [PDF]

Home page
 GeneticsHome page
G. R. Brown, E. E. Kadel III, D. L. Bassoni, K. L. Kiehne, B. Temesgen, J. P. van Buijtenen, M. M. Sewell, K. A. Marshall, and D. B. Neale
Anchored Reference Loci in Loblolly Pine (Pinus taeda L.) for Integrating Pine Genomics
Genetics, October 1, 2001; 159(2): 799 - 809.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
M. I. Tenaillon, M. C. Sawkins, A. D. Long, R. L. Gaut, J. F. Doebley, and B. S. Gaut
Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
PNAS, July 19, 2001; (2001) 151244298.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
A. J. Cardinal, M. Lee, N. Sharopova, W. L. Woodman-Clikeman, and M. J. Long
Genetic Mapping and Analysis of Quantitative Trait Loci for Resistance to Stalk Tunneling by the European Corn Borer in Maize
Crop Sci., May 1, 2001; 41(3): 835 - 845.
[Abstract] [Full Text] [PDF]

Home page
 J Exp BotHome page
W. Bruce, P. Desbons, O. Crasta, and O. Folkerts
Gene expression profiling of two related maize inbred lines with contrasting root-lodging traits
J. Exp. Bot., March 1, 2001; 52(90001): 459 - 468.
[Abstract] [Full Text]

Home page
 Plant Physiol.Home page
R. J. Okagaki, R. G. Kynast, S. M. Livingston, C. D. Russell, H. W. Rines, and R. L. Phillips
Mapping Maize Sequences to Chromosomes Using Oat-Maize Chromosome Addition Materials
Plant Physiology, March 1, 2001; 125(3): 1228 - 1235.
[Abstract] [Full Text]

Home page
 Plant Physiol.Home page
N. C. Collins, T. Lahaye, C. Peterhänsel, A. Freialdenhoven, M. Corbitt, and P. Schulze-Lefert
Sequence Haplotypes Revealed by Sequence-Tagged Site Fine Mapping of the Ror1 Gene in the Centromeric Region of Barley Chromosome 1H
Plant Physiology, March 1, 2001; 125(3): 1236 - 1247.
[Abstract] [Full Text]

Home page
 Genome Res.Home page
B. S. Gaut
Patterns of Chromosomal Duplication in Maize and Their Implications for Comparative Maps of the Grasses
Genome Res., January 1, 2001; 11(1): 55 - 66.
[Abstract] [Full Text]

Home page
 Plant Physiol.Home page
V. Raboy, P. F. Gerbasi, K. A. Young, S. D. Stoneberg, S. G. Pickett, A. T. Bauman, P. P.N. Murthy, W. F. Sheridan, and D. S. Ertl
Origin and Seed Phenotype of Maize low phytic acid 1-1 and low phytic acid 2-1
Plant Physiology, September 1, 2000; 124(1): 355 - 368.
[Abstract] [Full Text]

Home page
 Proc. Natl. Acad. Sci. USAHome page
B. S. Gaut, M. Le Thierry d'Ennequin, A. S. Peek, and M. C. Sawkins
Maize as a model for the evolution of plant nuclear genomes
PNAS, June 20, 2000; 97(13): 7008 - 7015.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
K. M. Devos and M. D. Gale
Genome Relationships: The Grass Model in Current Research
PLANT CELL, May 1, 2000; 12(5): 637 - 646.
[Abstract] [Full Text]

Home page
 Plant Physiol.Home page
B. J. Miflin
Crop Biotechnology. Where Now?
Plant Physiology, May 1, 2000; 123(1): 17 - 28.
[Abstract] [Full Text]

Home page
 Proc. Natl. Acad. Sci. USAHome page
H. Fu, Z. Zheng, and H. K. Dooner
Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude
PNAS, January 22, 2002; 99(2): 1082 - 1087.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
M. I. Tenaillon, M. C. Sawkins, A. D. Long, R. L. Gaut, J. F. Doebley, and B. S. Gaut
Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
PNAS, July 31, 2001; 98(16): 9161 - 9166.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
R. Ming, S.-C. Liu, P. H. Moore, J. E. Irvine, and A. H. Paterson
QTL Analysis in a Complex Autopolyploid: Genetic Control of Sugar Content in Sugarcane
Genome Res., December 1, 2001; 11(12): 2075 - 2084.
[Abstract] [Full Text] [PDF]


HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Copyright © 1999 by the Genetics Society of America.