Genetics, Vol. 151, 521-529, February 1999, Copyright © 1999

HMR-I Is an Origin of Replication and a Silencer in Saccharomyces cerevisiae

David H. Riviera, Joanne L. Ekenaa, and Jasper Rineb
a Department of Cell and Structural Biology and Department of Microbiology, University of Illinois, Urbana-Champaign, Urbana, Illinois 61801
b Department of Molecular and Cell Biology, Division of Genetics, University of California, Berkeley, California 94720

Corresponding author: David H. Rivier, Department of Cell and Structural Biology, University of Illinois, Urbana-Champaign, 601 S. Goodwin Ave., Urbana, IL 61801., rivier{at}uiuc.edu (E-mail)

Communicating editor: F. WINSTON

There appear to be fundamental differences between the properties of the silencers at HML and HMR, with some being origins of replication and others not. Moreover, past studies have suggested that HMR-I's role in silencing may be restricted to plasmid contexts. This study established that HMR-I, like HMR-E and unlike either HML silencer, is an origin of replication. Moreover, both HMR-E and HMR-I contribute to silencing of a chromosomal HMR locus. In addition, we found that Abf1p plays no unique role in silencer function.





This article has been cited by other articles:


Home page
Mol. Cell. Biol.Home page
L. Gao and D. S. Gross
Sir2 Silences Gene Transcription by Targeting the Transition between RNA Polymerase II Initiation and Elongation
Mol. Cell. Biol., June 15, 2008; 28(12): 3979 - 3994.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
L. Valenzuela, N. Dhillon, R. N. Dubey, M. R. Gartenberg, and R. T. Kamakaka
Long-Range Communication between the Silencers of HMR
Mol. Cell. Biol., March 15, 2008; 28(6): 1924 - 1935.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
L. Casey, E. E. Patterson, U. Muller, and C. A. Fox
Conversion of a Replication Origin to a Silencer through a Pathway Shared by a Forkhead Transcription Factor and an S Phase Cyclin
Mol. Biol. Cell, February 1, 2008; 19(2): 608 - 622.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
R. N. Dubey and M. R. Gartenberg
A tDNA establishes cohesion of a neighboring silent chromatin domain
Genes & Dev., September 1, 2007; 21(17): 2150 - 2160.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
B. Yang and A. L. Kirchmaier
Bypassing the Catalytic Activity of SIR2 for SIR Protein Spreading in Saccharomyces cerevisiae
Mol. Biol. Cell, December 1, 2006; 17(12): 5287 - 5297.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
Y. Zou, Q. Yu, and X. Bi
Asymmetric Positioning of Nucleosomes and Directional Establishment of Transcriptionally Silent Chromatin by Saccharomyces cerevisiae Silencers
Mol. Cell. Biol., October 15, 2006; 26(20): 7806 - 7819.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
Y. Zou, Q. Yu, Y.-H. Chiu, and X. Bi
Position Effect on the Directionality of Silencer Function in Saccharomyces cerevisiae
Genetics, September 1, 2006; 174(1): 203 - 213.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
K. H. McConnell, P. Muller, and C. A. Fox
Tolerance of Sir1p/Origin Recognition Complex-Dependent Silencing for Enhanced Origin Firing at HMRa.
Mol. Cell. Biol., March 1, 2006; 26(5): 1955 - 1966.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
H. Irlbacher, J. Franke, T. Manke, M. Vingron, and A. E. Ehrenhofer-Murray
Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression
Genes & Dev., August 1, 2005; 19(15): 1811 - 1822.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
M. Oki, L. Valenzuela, T. Chiba, T. Ito, and R. T. Kamakaka
Barrier Proteins Remodel and Modify Chromatin To Restrict Silenced Domains
Mol. Cell. Biol., March 1, 2004; 24(5): 1956 - 1967.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
A. Grunweller and A. E. Ehrenhofer-Murray
A Novel Yeast Silencer: The 2{micro} Origin of Saccharomyces cerevisiae Has HST3-, MIG1- and SIR-Dependent Silencing Activity
Genetics, September 1, 2002; 162(1): 59 - 71.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
A. Poloumienko, A. Dershowitz, J. De, and C. S. Newlon
Completion of Replication Map of Saccharomyces cerevisiae Chromosome III
Mol. Biol. Cell, November 1, 2001; 12(11): 3317 - 3327.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
K. Sharma, M. Weinberger, and J. A. Huberman
Roles for Internal and Flanking Sequences in Regulating the Activity of Mating-Type-Silencer-Associated Replication Origins in Saccharomyces cerevisiae
Genetics, September 1, 2001; 159(1): 35 - 45.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
Y. Wang, M. Vujcic, and D. Kowalski
DNA Replication Forks Pause at Silent Origins near the HML Locus in Budding Yeast
Mol. Cell. Biol., August 1, 2001; 21(15): 4938 - 4948.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
H. Forsberg and P. O. Ljungdahl
Genetic and Biochemical Analysis of the Yeast Plasma Membrane Ssy1p-Ptr3p-Ssy5p Sensor of Extracellular Amino Acids
Mol. Cell. Biol., February 1, 2001; 21(3): 814 - 826.
[Abstract] [Full Text]


Home page
ScienceHome page
A. L. Kirchmaier and J. Rine
DNA Replication-Independent Silencing in S. cerevisiae
Science, January 26, 2001; 291(5504): 646 - 650.
[Abstract] [Full Text]


Home page
GeneticsHome page
P. C. Hollenhorst, M. E. Bose, M. R. Mielke, U. Müller, and C. A. Fox
Forkhead Genes in Transcriptional Silencing, Cell Morphology and the Cell Cycle: Overlapping and Distinct Functions for FKH1 and FKH2 in Saccharomyces cerevisiae
Genetics, April 1, 2000; 154(4): 1533 - 1548.
[Abstract] [Full Text]


Home page
Genes Dev.Home page
T.-H. Cheng and M. R. Gartenberg
Yeast heterochromatin is a dynamic structure that requires silencers continuously
Genes & Dev., February 15, 2000; 14(4): 452 - 463.
[Abstract] [Full Text]


Home page
Mol. Cell. Biol.Home page
M. Vujcic, C. A. Miller, and D. Kowalski
Activation of Silent Replication Origins at Autonomously Replicating Sequence Elements near the HML Locus in Budding Yeast
Mol. Cell. Biol., September 1, 1999; 19(9): 6098 - 6109.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
E. Y. Xu, S. Kim, K. Replogle, J. Rine, and D. H. Rivier
Identification of SAS4 and SAS5, Two Genes That Regulate Silencing in Saccharomyces cerevisiae
Genetics, September 1, 1999; 153(1): 13 - 23.
[Abstract] [Full Text]


Home page
GeneticsHome page
E. Y. Xu, S. Kim, and D. H. Rivier
SAS4 and SAS5 Are Locus-Specific Regulators of Silencing in Saccharomyces cerevisiae
Genetics, September 1, 1999; 153(1): 25 - 33.
[Abstract] [Full Text]