Genetics, Vol 144, 349-360, Copyright © 1996


INVESTIGATIONS

Estimation of Deleterious-Mutation Parameters in Natural Populations

H. W. Deng and M. Lynch
Department of Biology, University of Oregon, Eugene, Oregon 97403

The rate and average effects of spontaneous deleterious mutations are important determinants of the evolution of breeding systems and of the vulnerability of small populations to extinction. Nevertheless, few attempts have been made to estimate the properties of such mutations, and those studies that have been performed have been extremely labor intensive, relying on long-term, laboratory mutation-accumulation experiments. We present an alternative to the latter approach. For populations in which the genetic variance for fitness is a consequence of selection-mutation balance, the mean fitness and genetic variance of fitness in outbred and inbred generations can be expressed as simple functions of the genomic mutation rate, average homozygous effect and average dominance coefficient of new mutations. Using empirical estimates for the mean and genetic variance of fitness, these expressions can then be solved to obtain joint estimates of the deleterious-mutation parameters. We employ computer simulations to evaluate the degree of bias of the estimators and present some general recommendations on the application of the technique. Our procedures provide some hope for obtaining estimates of the properties of deleterious mutations from a wide phylogenetic range of species as well as a mechanism for testing the validity of alternative models for the maintenance of genetic variance for fitness.


This article has been cited by other articles:


Home page
BioinformaticsHome page
J.-L. Li, M.-X. Li, Y.-F. Guo, H.-Y. Deng, and H.-W. Deng
JADE: a distributed Java application for deleterious genomic mutation (DGM) estimation
Bioinformatics, August 1, 2006; 22(15): 1926 - 1927.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
B. Fernandez, A. Garcia-Dorado, and A. Caballero
The Effect of Antagonistic Pleiotropy on the Estimation of the Average Coefficient of Dominance of Deleterious Mutations
Genetics, December 1, 2005; 171(4): 2097 - 2112.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
B. Fernandez, A. Garcia-Dorado, and A. Caballero
Analysis of the Estimators of the Average Coefficient of Dominance of Deleterious Mutations
Genetics, October 1, 2004; 168(2): 1053 - 1069.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
S. Glemin, J. Ronfort, and T. Bataillon
Patterns of Inbreeding Depression and Architecture of the Load in Subdivided Populations
Genetics, December 1, 2003; 165(4): 2193 - 2212.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
J. K. Kelly
Deleterious Mutations and the Genetic Variance of Male Fitness Components in Mimulus guttatus
Genetics, July 1, 2003; 164(3): 1071 - 1085.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
H.-W. Deng, G. Gao, and J.-L. Li
Estimation of Deleterious Genomic Mutation Parameters in Natural Populations by Accounting for Variable Mutation Effects Across Loci
Genetics, November 1, 2002; 162(3): 1487 - 1500.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
D. M. Wloch, K. Szafraniec, R. H. Borts, and R. Korona
Direct Estimate of the Mutation Rate and the Distribution of Fitness Effects in the Yeast Saccharomyces cerevisiae
Genetics, October 1, 2001; 159(2): 441 - 452.
[Abstract] [Full Text] [PDF]


Home page
ScienceHome page
D. M. Welch and M. Meselson
Evidence for the Evolution of Bdelloid Rotifers Without Sexual Reproduction or Genetic Exchange
Science, May 19, 2000; 288(5469): 1211 - 1215.
[Abstract] [Full Text]


Home page
GeneticsHome page
J. Li and H.-W. Deng
Estimation of Parameters of Deleterious Mutations in Partial Selfing or Partial Outcrossing Populations and in Nonequilibrium Populations
Genetics, April 1, 2000; 154(4): 1893 - 1906.
[Abstract] [Full Text]


Home page
GeneticsHome page
J.-L. Li, J. Li, and H.-W. Deng
The Effect of Overdominance on Characterizing Deleterious Mutations in Large Natural Populations
Genetics, February 1, 1999; 151(2): 895 - 913.
[Abstract] [Full Text]


Home page
GeneticsHome page
P. D. Keightley
Inference of Genome-Wide Mutation Rates and Distributions of Mutation Effects for Fitness Traits: A Simulation Study
Genetics, November 1, 1998; 150(3): 1283 - 1293.
[Abstract] [Full Text]


Home page
GeneticsHome page
H.-W. Deng
Characterization of Deleterious Mutations in Outcrossing Populations
Genetics, October 1, 1998; 150(2): 945 - 956.
[Abstract] [Full Text]


Home page
GeneticsHome page
J. W. Drake, B. Charlesworth, D. Charlesworth, and J. F. Crow
Rates of Spontaneous Mutation
Genetics, April 1, 1998; 148(4): 1667 - 1686.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
H.-W. Deng
Estimating Within-Locus Nonadditive Coefficient and Discriminating Dominance Versus Overdominance as the Genetic Cause of Heterosis
Genetics, April 1, 1998; 148(4): 2003 - 2014.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
H.-W. Deng and Y.-X. Fu
Conditions for Positive and Negative Correlations Between Fitness and Heterozygosity in Equilibrium Populations
Genetics, March 1, 1998; 148(3): 1333 - 1340.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
S. A. Shabalina, L. Yu. Yampolsky, and A. S. Kondrashov
Rapid decline of fitness in panmictic populations of Drosophila melanogaster maintained under relaxed natural selection
PNAS, November 25, 1997; 94(24): 13034 - 13039.
[Abstract] [Full Text] [PDF]