Genetics, Vol 140, 745-754, Copyright © 1995


INVESTIGATIONS

Dominance Is the Major Genetic Basis of Heterosis in Rice as Revealed by QTL Analysis Using Molecular Markers

J. Xiao, J. Li, L. Yuan and S. D. Tanksley
Department of Plant Breeding and Biometry, Cornell University, Ithaca, New York, 14853

A set of 194 F(7) lines derived from a subspecific rice cross showing strong F(1) heterosis was backcrossed to the two parents. The materials (388 BC(1)F(7) lines, 194 F(8) lines, two parents, F(1)) were phenotyped for 12 quantitative traits. A total of 37 significant QTLs (LOD >/= 2.0) was detected through 141 RFLP markers in the BC(1)F(7) populations. Twenty-seven (73%) quantitative trait loci (QTLs) were detected in only one of the BC(1)F(7) populations. In 82% of these cases, the heterozygotes were superior to the respective homozygotes. The remaining 10 (27%) QTLs were detected in both BC(1)F(7) populations, and the heterozygote had a phenotype falling between those of the two homozygotes and in no instances were the heterozygotes found to be superior to both homozygotes. These results suggest that dominance complementation is the major genetic basis of heterosis in rice. This conclusion was strengthened by the finding that there was no correlation between most traits and overall genome heterozygosity and that there were some recombinant inbred lines in the F(8) population having phenotypic values superior to the F(1) for all of the traits evaluated--a result not expected if overdominance was a major contributor to heterosis. Digenic epistasis was not evident.


This article has been cited by other articles:


Home page
GeneticsHome page
M. Radoev, H. C. Becker, and W. Ecke
Genetic Analysis of Heterosis for Yield and Yield Components in Rapeseed (Brassica napus L.) by Quantitative Trait Locus Mapping
Genetics, July 1, 2008; 179(3): 1547 - 1558.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
A. E. Melchinger, H. F. Utz, and C. C. Schon
Genetic Expectations of Quantitative Trait Loci Main and Interaction Effects Obtained With the Triple Testcross Design and Their Relevance for the Analysis of Heterosis
Genetics, April 1, 2008; 178(4): 2265 - 2274.
[Abstract] [Full Text] [PDF]


Home page
Crop Sci.Home page
Y.-G. Cho, H.-J. Kang, J.-S. Lee, Y.-T. Lee, S.-J. Lim, H. Gauch, M.-Y. Eun, and S. R. McCouch
Identification of Quantitative Trait Loci in Rice for Yield, Yield Components, and Agronomic Traits across Years and Locations
Crop Sci., November 7, 2007; 47(6): 2403 - 2417.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
A. E. Melchinger, H. F. Utz, H.-P. Piepho, Z.-B. Zeng, and C. C. Schon
The Role of Epistasis in the Manifestation of Heterosis: A Systems-Oriented Approach
Genetics, November 1, 2007; 177(3): 1815 - 1825.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
B. Kusterer, H.-P. Piepho, H. F. Utz, C. C. Schon, J. Muminovic, R. C. Meyer, T. Altmann, and A. E. Melchinger
Heterosis for Biomass-Related Traits in Arabidopsis Investigated by Quantitative Trait Loci Analysis of the Triple Testcross Design With Recombinant Inbred Lines
Genetics, November 1, 2007; 177(3): 1839 - 1850.
[Abstract] [Full Text] [PDF]


Home page
ANN BOT (LOND)Home page
S.-H. Cheng, J.-Y. Zhuang, Y.-Y. Fan, J.-H. Du, and L.-Y. Cao
Progress in Research and Development on Hybrid Rice: A Super-domesticate in China
Ann. Bot., October 1, 2007; 100(5): 959 - 966.
[Abstract] [Full Text] [PDF]


Home page
Crop Sci.Home page
B. Wang, Y. Wu, W. Guo, X. Zhu, N. Huang, and T. Zhang
QTL Analysis and Epistasis Effects Dissection of Fiber Qualities in an Elite Cotton Hybrid Grown in Second Generation
Crop Sci., July 30, 2007; 47(4): 1384 - 1392.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
E. Frascaroli, M. A. Cane, P. Landi, G. Pea, L. Gianfranceschi, M. Villa, M. Morgante, and M. E. Pe
Classical Genetic and Quantitative Trait Loci Analyses of Heterosis in a Maize Hybrid Between Two Elite Inbred Lines
Genetics, May 1, 2007; 176(1): 625 - 644.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
B. Kusterer, J. Muminovic, H. F. Utz, H.-P. Piepho, S. Barth, M. Heckenberger, R. C. Meyer, T. Altmann, and A. E. Melchinger
Analysis of a Triple Testcross Design With Recombinant Inbred Lines Reveals a Significant Role of Epistasis in Heterosis for Biomass-Related Traits in Arabidopsis
Genetics, April 1, 2007; 175(4): 2009 - 2017.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
N. M. Springer and R. M. Stupar
Allelic variation and heterosis in maize: How do two halves make more than a whole?
Genome Res., March 1, 2007; 17(3): 264 - 275.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
D. Hedgecock, J.-Z. Lin, S. DeCola, C. D. Haudenschild, E. Meyer, D. T. Manahan, and B. Bowen
Transcriptomic analysis of growth heterosis in larval Pacific oysters (Crassostrea gigas)
PNAS, February 13, 2007; 104(7): 2313 - 2318.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
Y. Semel, J. Nissenbaum, N. Menda, M. Zinder, U. Krieger, N. Issman, T. Pleban, Z. Lippman, A. Gur, and D. Zamir
From the Cover: Overdominant quantitative trait loci for yield and fitness in tomato
PNAS, August 29, 2006; 103(35): 12981 - 12986.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
R. A. Swanson-Wagner, Y. Jia, R. DeCook, L. A. Borsuk, D. Nettleton, and P. S. Schnable
All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents
PNAS, May 2, 2006; 103(18): 6805 - 6810.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
M. J. Thomson, J. D. Edwards, E. M. Septiningsih, S. E. Harrington, and S. R. McCouch
Substitution Mapping of dth1.1, a Flowering-Time Quantitative Trait Locus (QTL) Associated With Transgressive Variation in Rice, Reveals Multiple Sub-QTL
Genetics, April 1, 2006; 172(4): 2501 - 2514.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
A. You, X. Lu, H. Jin, X. Ren, K. Liu, G. Yang, H. Yang, L. Zhu, and G. He
Identification of Quantitative Trait Loci Across Recombinant Inbred Lines and Testcross Populations for Traits of Agronomic Importance in Rice
Genetics, February 1, 2006; 172(2): 1287 - 1300.
[Abstract] [Full Text] [PDF]


Home page
Crop Sci.Home page
R. Mihaljevic, H. F. Utz, and A. E. Melchinger
No Evidence for Epistasis in Hybrid and Per Se Performance of Elite European Flint Maize Inbreds from Generation Means and QTL Analyses
Crop Sci., October 27, 2005; 45(6): 2605 - 2613.
[Abstract] [Full Text] [PDF]


Home page
Plant Physiol.Home page
J. Bao, S. Lee, C. Chen, X. Zhang, Y. Zhang, S. Liu, T. Clark, J. Wang, M. Cao, H. Yang, et al.
Serial Analysis of Gene Expression Study of a Hybrid Rice Strain (LYP9) and Its Parental Cultivars
Plant Physiology, July 1, 2005; 138(3): 1216 - 1231.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
K.-Y. Chen and S. D. Tanksley
High-Resolution Mapping and Functional Analysis of se2.1: A Major Stigma Exsertion Quantitative Trait Locus Associated With the Evolution From Allogamy to Autogamy in the Genus Lycopersicon
Genetics, November 1, 2004; 168(3): 1563 - 1573.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
N. Lauter, C. Gustus, A. Westerbergh, and J. Doebley
The Inheritance and Evolution of Leaf Pigmentation and Pubescence in Teosinte
Genetics, August 1, 2004; 167(4): 1949 - 1959.
[Abstract] [Full Text] [PDF]


Home page
Plant Physiol.Home page
R. C. Meyer, O. Torjek, M. Becher, and T. Altmann
Heterosis of Biomass Production in Arabidopsis. Establishment during Early Development
Plant Physiology, April 1, 2004; 134(4): 1813 - 1823.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
D. Zhong, A. Pai, and G. Yan
Quantitative Trait Loci for Susceptibility to Tapeworm Infection in the Red Flour Beetle
Genetics, November 1, 2003; 165(3): 1307 - 1315.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
J. Hua, Y. Xing, W. Wu, C. Xu, X. Sun, S. Yu, and Q. Zhang
Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid
PNAS, March 4, 2003; 100(5): 2574 - 2579.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
J. P. Hua, Y. Z. Xing, C. G. Xu, X. L. Sun, S. B. Yu, and Q. Zhang
Genetic Dissection of an Elite Rice Hybrid Revealed That Heterozygotes Are Not Always Advantageous for Performance
Genetics, December 1, 2002; 162(4): 1885 - 1895.
[Abstract] [Full Text] [PDF]


Home page
ScienceHome page
S. A. Goff, D. Ricke, T.-H. Lan, G. Presting, R. Wang, M. Dunn, J. Glazebrook, A. Sessions, P. Oeller, H. Varma, et al.
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)
Science, April 5, 2002; 296(5565): 92 - 100.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
Z.-K. Li, L. J. Luo, H. W. Mei, D. L. Wang, Q. Y. Shu, R. Tabien, D. B. Zhong, C. S. Ying, J. W. Stansel, G. S. Khush, et al.
Overdominant Epistatic Loci Are the Primary Genetic Basis of Inbreeding Depression and Heterosis in Rice. I. Biomass and Grain Yield
Genetics, August 1, 2001; 158(4): 1737 - 1753.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
L. J. Luo, Z.-K. Li, H. W. Mei, Q. Y. Shu, R. Tabien, D. B. Zhong, C. S. Ying, J. W. Stansel, G. S. Khush, and A. H. Paterson
Overdominant Epistatic Loci Are the Primary Genetic Basis of Inbreeding Depression and Heterosis in Rice. II. Grain Yield Components
Genetics, August 1, 2001; 158(4): 1755 - 1771.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
Y. Takahashi, A. Shomura, T. Sasaki, and M. Yano
Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2
PNAS, June 12, 2001; (2001) 111136798.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
A. B. Korol, Y. I. Ronin, A. M. Itskovich, J. Peng, and E. Nevo
Enhanced Efficiency of Quantitative Trait Loci Mapping Analysis Based on Multivariate Complexes of Quantitative Traits
Genetics, April 1, 2001; 157(4): 1789 - 1803.
[Abstract] [Full Text]


Home page
GeneticsHome page
Y. Ohno, H. Tanase, T. Nabika, K. Otsuka, T. Sasaki, T. Suzawa, T. Morii, Y. Yamori, and T. Saruta
Selective Genotyping With Epistasis Can Be Utilized for a Major Quantitative Trait Locus Mapping in Hypertension in Rats
Genetics, June 1, 2000; 155(2): 785 - 792.
[Abstract] [Full Text]


Home page
GeneticsHome page
S. W. Omholt, E. Plahte, L. Øyehaug, and K. Xiang
Gene Regulatory Networks Generating the Phenomena of Additivity, Dominance and Epistasis
Genetics, June 1, 2000; 155(2): 969 - 980.
[Abstract] [Full Text]


Home page
Plant CellHome page
M. Running, M. Scanlon, and N. Sinha
Maize Genetics 2000--And Beyond
PLANT CELL, June 1, 2000; 12(6): 829 - 835.
[Full Text] [PDF]


Home page
GeneticsHome page
T. Yamamoto, H. Lin, T. Sasaki, and M. Yano
Identification of Heading Date Quantitative Trait Locus Hd6 and Characterization of Its Epistatic Interactions With Hd2 in Rice Using Advanced Backcross Progeny
Genetics, February 1, 2000; 154(2): 885 - 891.
[Abstract] [Full Text]


Home page
GeneticsHome page
J. Yan, J. Zhu, C. He, M. Benmoussa, and P. Wu
Molecular Dissection of Developmental Behavior of Plant Height in Rice (Oryza sativa L.)
Genetics, November 1, 1998; 150(3): 1257 - 1265.
[Abstract] [Full Text]


Home page
GeneticsHome page
J. B. Hollick and V. L. Chandler
Epigenetic Allelic States of a Maize Transcriptional Regulatory Locus Exhibit Overdominant Gene Action
Genetics, October 1, 1998; 150(2): 891 - 897.
[Abstract] [Full Text]


Home page
Proc. Natl. Acad. Sci. USAHome page
S. B. Yu, J. X. Li, C. G. Xu, Y. F. Tan, Y. J. Gao, X. H. Li, Q. Zhang, and M. A. S. Maroof
Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid
PNAS, August 19, 1997; 94(17): 9226 - 9231.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
A H Paterson
Molecular dissection of quantitative traits: progress and prospects.
Genome Res., November 1, 1995; 5(4): 321 - 333.
[Abstract] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
Y. Takahashi, A. Shomura, T. Sasaki, and M. Yano
Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2
PNAS, July 3, 2001; 98(14): 7922 - 7927.
[Abstract] [Full Text] [PDF]