Genetics, Vol 132, 1141-1160, Copyright © 1992

INVESTIGATIONS

High Density Molecular Linkage Maps of the Tomato and Potato Genomes

S. D. Tanksley, M. W. Ganal, J. P. Prince, M. C. de-Vicente, M. W. Bonierbale, P. Broun, T. M. Fulton, J. J. Giovannoni, S. Grandillo, G. B. Martin, R. Messeguer, J. C. Miller, L. Miller, A. H. Paterson, O. Pineda, M. S. Roder, R. A. Wing, W. Wu and N. D. Young
Department of Plant Breeding and Biometry, Cornell University, Ithaca, New York 14853

High density molecular linkage maps, comprised of more than 1000 markers with an average spacing between markers of approximately 1.2 cM (ca. 900 kb), have been constructed for the tomato and potato genomes. As the two maps are based on a common set of probes, it was possible to determine, with a high degree of precision, the breakpoints corresponding to 5 chromosomal inversions that differentiate the tomato and potato genomes. All of the inversions appear to have resulted from single breakpoints at or near the centromeres of the affected chromosomes, the result being the inversion of entire chromosome arms. While the crossing over rate among chromosomes appears to be uniformly distributed with respect to chromosome size, there is tremendous heterogeneity of crossing over within chromosomes. Regions of the map corresponding to centromeres and centromeric heterochromatin, and in some instances telomeres, experience up to 10-fold less recombination than other areas of the genome. Overall, 28% of the mapped loci reside in areas of putatively suppressed recombination. This includes loci corresponding to both random, single copy genomic clones and transcribed genes (detected with cDNA probes). The extreme heterogeneity of crossing over within chromosomes has both practical and evolutionary implications. Currently tomato and potato are among the most thoroughly mapped eukaryotic species and the availability of high density molecular linkage maps should facilitate chromosome walking, quantitative trait mapping, marker-assisted breeding and evolutionary studies in these two important and well studied crop species.

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				Z. Schwarz-Sommer, E. de Andrade Silva, R. Berndtgen, W.-E. Lonnig, A. Muller, I. Nindl, K. Stuber, J. Wunder, H. Saedler, T. Gubitz, et al. A Linkage Map of an F2 Hybrid Population of Antirrhinum majus and A. molle Genetics, February 1, 2003; 163(2): 699 - 710. [Abstract] [Full Text] [PDF]

				C. M. Ronning, S. S. Stegalkina, R. A. Ascenzi, O. Bougri, A. L. Hart, T. R. Utterbach, S. E. Vanaken, S. B. Riedmuller, J. A. White, J. Cho, et al. Comparative Analyses of Potato Expressed Sequence Tag Libraries Plant Physiology, February 1, 2003; 131(2): 419 - 429. [Abstract] [Full Text] [PDF]

				E. Fridman and D. Zamir Functional Divergence of a Syntenic Invertase Gene Family in Tomato, Potato, and Arabidopsis Plant Physiology, February 1, 2003; 131(2): 603 - 609. [Abstract] [Full Text] [PDF]

				A. Itoh, A. L. Schilmiller, B. C. McCaig, and G. A. Howe Identification of a Jasmonate-regulated Allene Oxide Synthase That Metabolizes 9-Hydroperoxides of Linoleic and Linolenic Acids J. Biol. Chem., November 22, 2002; 277(48): 46051 - 46058. [Abstract] [Full Text] [PDF]

				M. R. Knox and T. H. N. Ellis Excess Heterozygosity Contributes to Genetic Map Expansion in Pea Recombinant Inbred Populations Genetics, October 1, 2002; 162(2): 861 - 873. [Abstract] [Full Text] [PDF]

				S. Moore, J. Vrebalov, P. Payton, and J. Giovannoni Use of genomics tools to isolate key ripening genes and analyse fruit maturation in tomato J. Exp. Bot., October 1, 2002; 53(377): 2023 - 2030. [Abstract] [Full Text] [PDF]

				G. B. Seymour, K. Manning, E. M. Eriksson, A. H. Popovich, and G. J. King Genetic identification and genomic organization of factors affecting fruit texture J. Exp. Bot., October 1, 2002; 53(377): 2065 - 2071. [Abstract] [Full Text] [PDF]

				M. Causse, V. Saliba-Colombani, L. Lecomte, P. Duffe, P. Rousselle, and M. Buret QTL analysis of fruit quality in fresh market tomato: a few chromosome regions control the variation of sensory and instrumental traits J. Exp. Bot., October 1, 2002; 53(377): 2089 - 2098. [Abstract] [Full Text] [PDF]

				C. Li, M. M. Williams, Y.-T. Loh, G. I. Lee, and G. A. Howe Resistance of Cultivated Tomato to Cell Content-Feeding Herbivores Is Regulated by the Octadecanoid-Signaling Pathway Plant Physiology, September 1, 2002; 130(1): 494 - 503. [Abstract] [Full Text] [PDF]

				T. Greb, G. Schmitz, and K. Theres Isolation and characterization of the Spindly homologue from tomato J. Exp. Bot., August 1, 2002; 53(375): 1829 - 1830. [Abstract] [Full Text] [PDF]

				A. Pedrosa, N. Sandal, J. Stougaard, D. Schweizer, and A. Bachmair Chromosomal Map of the Model Legume Lotus japonicus Genetics, August 1, 2002; 161(4): 1661 - 1672. [Abstract] [Full Text] [PDF]

				S. Doganlar, A. Frary, M.-C. Daunay, R. N. Lester, and S. D. Tanksley A Comparative Genetic Linkage Map of Eggplant (Solanum melongena) and Its Implications for Genome Evolution in the Solanaceae Genetics, August 1, 2002; 161(4): 1697 - 1711. [Abstract] [Full Text] [PDF]

				S. Doganlar, A. Frary, M.-C. Daunay, R. N. Lester, and S. D. Tanksley Conservation of Gene Function in the Solanaceae as Revealed by Comparative Mapping of Domestication Traits in Eggplant Genetics, August 1, 2002; 161(4): 1713 - 1726. [Abstract] [Full Text] [PDF]

				R. Van der Hoeven, C. Ronning, J. Giovannoni, G. Martin, and S. Tanksley Deductions about the Number, Organization, and Evolution of Genes in the Tomato Genome Based on Analysis of a Large Expressed Sequence Tag Collection and Selective Genomic Sequencing PLANT CELL, July 1, 2002; 14(7): 1441 - 1456. [Abstract] [Full Text] [PDF]

				T. M. Fulton, R. Van der Hoeven, N. T. Eannetta, and S. D. Tanksley Identification, Analysis, and Utilization of Conserved Ortholog Set Markers for Comparative Genomics in Higher Plants PLANT CELL, July 1, 2002; 14(7): 1457 - 1467. [Abstract] [Full Text] [PDF]

				J. King, I. P. Armstead, I. S. Donnison, H. M. Thomas, R. N. Jones, M. J. Kearsey, L. A. Roberts, A. Thomas, W. G. Morgan, and I. P. King Physical and Genetic Mapping in the Grasses Lolium perenne and Festuca pratensis Genetics, May 1, 2002; 161(1): 315 - 324. [Abstract] [Full Text] [PDF]